RNA id: TU230461


Basic Information

Item Value
RNA id TU230461
length 209
lncRNA type intronic
GC content 0.29
exon number 2
gene id G203629
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91990872 ~ 91993704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagggacacattgaattaaagttaaatttgaatagggacacattgaattaAAGTCtcatttgaatagggacacattgaattaAAGTCtcatttgaatagggacacattgaataAACGTttaatttgaatagggacacattgaatgaaagttgaatttgaatagggacacattgaattaaagttaaatttgaatagggacacattgaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230387 lncRNA upstream 71053 91918870 ~ 91919819 (+) True G203561
TU230406 lncRNA upstream 128909 91861393 ~ 91861963 (+) True G203579
TU230385 lncRNA upstream 137295 91853213 ~ 91853577 (+) True G203559
TU230361 lncRNA upstream 167076 91822319 ~ 91823796 (+) True G203547
TU230313 lncRNA upstream 221720 91768760 ~ 91769152 (+) True G203503
TU230515 lncRNA downstream 71556 92065260 ~ 92065481 (+) True G203671
TU230518 lncRNA downstream 80924 92074628 ~ 92074860 (+) True G203674
TU230523 lncRNA downstream 85018 92078722 ~ 92078933 (+) True G203679
TU230542 lncRNA downstream 105653 92099357 ~ 92099781 (+) False G203697
TU230544 lncRNA downstream 105653 92099357 ~ 92099781 (+) False G203697
XM_036959025.1 mRNA upstream 57518 91853852 ~ 91933354 (+) False LOC110502363
XM_036959026.1 mRNA upstream 57518 91853852 ~ 91933354 (+) False LOC110502363
XM_036959027.1 mRNA upstream 57518 91853852 ~ 91933354 (+) False LOC110502363
XM_036959031.1 mRNA upstream 57518 91853852 ~ 91933354 (+) False LOC110502363
XM_036959034.1 mRNA upstream 57518 91853852 ~ 91933354 (+) False LOC110502363
XM_021576837.2 mRNA downstream 34730 92028434 ~ 92049230 (+) True smc1b
LOC110502379 mRNA downstream 63858 92057562 ~ 92063708 (+) True LOC110502379
XM_021576854.2 mRNA downstream 71894 92065598 ~ 92072317 (+) True borcs5
XM_021576866.2 mRNA downstream 92610 92086314 ~ 92116411 (+) False LOC110499798
XM_021576873.2 mRNA downstream 116796 92110500 ~ 92116411 (+) True LOC110499798
TU230367 other upstream 143472 91826849 ~ 91847400 (+) True G203551
TU230248 other upstream 318973 91668836 ~ 91671899 (+) True G203438
TU230224 other upstream 366579 91622001 ~ 91624293 (+) True G203414
TU230045 other upstream 451499 91366337 ~ 91539373 (+) True mgat4c
TU229614 other upstream 752881 91237025 ~ 91237991 (+) False LOC110499641
TU230483 other downstream 28051 92021755 ~ 92024742 (+) True G203646
TU231132 other downstream 163571 92157275 ~ 92159903 (+) True G204240
TU231530 other downstream 687642 92681346 ~ 92682355 (+) False G204593
TU231531 other downstream 687642 92681346 ~ 92682313 (+) True G204593
TU232035 other downstream 843720 92837424 ~ 92838127 (+) False LOC110499942

Expression Profile