RNA id: TU230542



Basic Information


Item Value
RNA id TU230542
length 279
lncRNA type intronic
GC content 0.59
exon number 2
gene id G203697
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92099357 ~ 92099781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctttccctatacaactgactaggtatcccctttccctatacaactgactaggtatcccccctttccctatacaactgactaggtgtccccctttccctatacaactgactaggtatcacctttccctatacaactgactaggtatcccctttccctatacaactgactaggtatcccccctttccctatacaactgactaggtatccccctttccctatacaactgactaggtatcccccttccctatacaactgactaggtatccccttttccctAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU230523 lncRNA upstream 20424 92078722 ~ 92078933 (+) True G203679
TU230518 lncRNA upstream 24497 92074628 ~ 92074860 (+) True G203674
TU230515 lncRNA upstream 33876 92065260 ~ 92065481 (+) True G203671
TU230461 lncRNA upstream 105653 91990872 ~ 91993704 (+) True G203629
TU230387 lncRNA upstream 179538 91918870 ~ 91919819 (+) True G203561
TU231097 lncRNA downstream 18441 92118222 ~ 92118699 (+) True G204211
TU231100 lncRNA downstream 22074 92121855 ~ 92122169 (+) True G204214
TU231112 lncRNA downstream 33236 92133017 ~ 92133229 (+) True G204226
TU231130 lncRNA downstream 53619 92153400 ~ 92154538 (+) True G204239
TU231181 lncRNA downstream 101643 92201424 ~ 92202395 (+) True G204277
XM_021576854.2 mRNA upstream 27040 92065598 ~ 92072317 (+) True borcs5
LOC110502379 mRNA upstream 35649 92057562 ~ 92063708 (+) True LOC110502379
XM_021576837.2 mRNA upstream 50127 92028434 ~ 92049230 (+) True smc1b
XM_036959047.1 mRNA upstream 91290 91937152 ~ 92008067 (+) True LOC110502371
XM_036959038.1 mRNA upstream 166003 91853852 ~ 91933354 (+) True LOC110502363
XM_021576873.2 mRNA downstream 10719 92110500 ~ 92116411 (+) True LOC110499798
XM_021576886.2 mRNA downstream 23279 92123060 ~ 92129748 (+) False LOC110499816
XM_021576880.2 mRNA downstream 23300 92123081 ~ 92129748 (+) True LOC110499816
XM_021576894.2 mRNA downstream 39299 92139080 ~ 92151823 (+) True LOC110499833
XM_021576940.2 mRNA downstream 288328 92388109 ~ 92392385 (+) True LOC110499877
TU230483 other upstream 74615 92021755 ~ 92024742 (+) True G203646
TU230367 other upstream 251957 91826849 ~ 91847400 (+) True G203551
TU230248 other upstream 427458 91668836 ~ 91671899 (+) True G203438
TU230224 other upstream 475064 91622001 ~ 91624293 (+) True G203414
TU230045 other upstream 559984 91366337 ~ 91539373 (+) True mgat4c
TU231132 other downstream 57494 92157275 ~ 92159903 (+) True G204240
TU231530 other downstream 581565 92681346 ~ 92682355 (+) False G204593
TU231531 other downstream 581565 92681346 ~ 92682313 (+) True G204593
TU232035 other downstream 737643 92837424 ~ 92838127 (+) False LOC110499942
TU232439 other downstream 1271612 93371393 ~ 93388550 (+) False G205404

Expression Profile