RNA id: TU231082


Basic Information

Item Value
RNA id TU231082
length 276
lncRNA type intronic
GC content 0.46
exon number 2
gene id G204196
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92099390 ~ 92099781 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATagggaaaaggggatacctagtcagttgtatagggaaaaggggatacctagtcagttgtatagggaaaggggatacctagtcagttgtatagggaaagggggacacctagtcagttgtatagggaaaggggggatacctagtcagttgtatagggaaaggggatacctagtcagttgtatagggaaaggtgatacctagtcagttgtatagggaaagggggacacctagtcagttgtatagggaaaggggggatacctagtcagttgtataggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231072 lncRNA downstream 12867 92086315 ~ 92086523 (-) True G204187
TU231056 lncRNA downstream 39419 92059616 ~ 92059971 (-) True G204171
TU231051 lncRNA downstream 45904 92053279 ~ 92053486 (-) True G204166
TU231050 lncRNA downstream 47189 92051893 ~ 92052201 (-) True G204165
TU230967 lncRNA downstream 164216 91933145 ~ 91935174 (-) True G204088
TU231098 lncRNA upstream 19101 92118882 ~ 92119139 (-) True G204212
TU231104 lncRNA upstream 21987 92121768 ~ 92122041 (-) True G204218
TU231110 lncRNA upstream 32086 92131867 ~ 92132082 (-) True G204224
TU231111 lncRNA upstream 32837 92132618 ~ 92132914 (-) True G204225
TU231164 lncRNA upstream 67167 92166948 ~ 92167190 (-) True G204264
XM_021576828.2 mRNA downstream 71617 92021755 ~ 92027773 (-) True LOC110499762
XM_036958992.1 mRNA downstream 262210 91780201 ~ 91837180 (-) False lrrk2
XM_036958987.1 mRNA downstream 262363 91780201 ~ 91837027 (-) False lrrk2
XR_005038802.1 mRNA downstream 262363 91782177 ~ 91837027 (-) True lrrk2
XM_021580318.2 mRNA downstream 358561 91691853 ~ 91740829 (-) True lrriq1
XM_036959104.1 mRNA upstream 53603 92153384 ~ 92190013 (-) False LOC110499841
XM_021576906.2 mRNA upstream 53603 92153384 ~ 92190372 (-) False LOC110499841
XM_036959106.1 mRNA upstream 53603 92153384 ~ 92190372 (-) True LOC110499841
XM_036934765.1 mRNA upstream 97555 92197336 ~ 92202031 (-) True LOC110533906
XM_021580367.2 mRNA upstream 110549 92210330 ~ 92228748 (-) True LOC110502383
TU230896 other downstream 311287 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 508341 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 1657965 90377557 ~ 90441425 (-) True G202279
TU228163 other downstream 2489500 89606837 ~ 89609890 (-) True LOC110499346
TU225173 other downstream 4772921 87322139 ~ 87326469 (-) True G198912
TU231426 other upstream 298279 92398060 ~ 92439601 (-) False LOC110499897
TU232213 other upstream 862263 92962044 ~ 92962934 (-) True G205192
TU234006 other upstream 2212643 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 2212746 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 2213609 94313390 ~ 94313918 (-) True G206744

Expression Profile