RNA id: TU231181



Basic Information


Item Value
RNA id TU231181
length 749
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G204277
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92201424 ~ 92202395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGGTCCTGCGGTGCACATTTTGGAACGAGTTTGGGAAACTCTATGCTAAGGAATACCAGGTATCATTCCTTCAACCACATACAAGAGAATAGCCTAGCACACAGGAATATGTATGCTtcctaaatggcaccatattccctttgtagtgcactccttttgaccataGCCcacagtgcactaaatagggattagggtACCAATTGGAATGCAGACAGGTGCAGTTTTAAATTAATAACTGTTGAAATCTCACCTTCTGAAATCTTCAGTTGTAGCTTCACTTCTTCAGAGATcttcaaagaacttcactgggttctctctgtgtcctaaattctacctatccctcctctcctttaaatAGGTTTTTCAGAGACACCTTCTTCAAGAGTGGAGGAGGGTTGGTTTGTATTAACTCTGTTTGCTTCCCTGAAACAGCTGTGAAGGAAAACGTGTCACATGCCGACTTAAGGCCTTAAGGCCACTGCATGGTGATCAGCCCTCCTGGCCTTTTAACAAGAACCACCACAGACGATGGCCAAATTCACCAGATGATCCTTGACCTGTTTGTTTGAATGCAGAATAAGAACCCTCTCTGTACCACAAGTTTTCCTACACTCTCAGAAAATGGGTACGGTTAGGGTACAGTATTGTTCCCTGAGGTATAAAAATGTCAAATTACACATAATGTACCTTTAGAGGTTCGGTATCTTTTAGGGTACATGTGCAAATAATCTAGTATTATGGTACATGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU231130 lncRNA upstream 46886 92153400 ~ 92154538 (+) True G204239
TU231112 lncRNA upstream 68195 92133017 ~ 92133229 (+) True G204226
TU231100 lncRNA upstream 79255 92121855 ~ 92122169 (+) True G204214
TU231097 lncRNA upstream 82725 92118222 ~ 92118699 (+) True G204211
TU230544 lncRNA upstream 101643 92099357 ~ 92099781 (+) False G203697
TU231193 lncRNA downstream 6904 92209299 ~ 92209553 (+) True G204287
TU231216 lncRNA downstream 25682 92228077 ~ 92228341 (+) True G204309
TU231219 lncRNA downstream 29315 92231710 ~ 92231909 (+) True G204312
TU231220 lncRNA downstream 30897 92233292 ~ 92235146 (+) False G204313
TU231221 lncRNA downstream 30897 92233292 ~ 92300447 (+) True G204313
XM_021576894.2 mRNA upstream 49601 92139080 ~ 92151823 (+) True LOC110499833
XM_021576886.2 mRNA upstream 71676 92123060 ~ 92129748 (+) False LOC110499816
XM_021576880.2 mRNA upstream 71676 92123081 ~ 92129748 (+) True LOC110499816
XM_021576866.2 mRNA upstream 85013 92086314 ~ 92116411 (+) False LOC110499798
XM_021576940.2 mRNA downstream 185714 92388109 ~ 92392385 (+) True LOC110499877
XM_021576970.2 mRNA downstream 251930 92454325 ~ 92460616 (+) True LOC110499906
XM_036959148.1 mRNA downstream 313429 92515824 ~ 92680198 (+) True LOC110502389
XM_036959163.1 mRNA downstream 439635 92642030 ~ 92643329 (+) True LOC118943603
XM_036959172.1 mRNA downstream 462430 92664825 ~ 92669744 (+) True LOC118943605
TU231132 other upstream 41521 92157275 ~ 92159903 (+) True G204240
TU230483 other upstream 176682 92021755 ~ 92024742 (+) True G203646
TU230367 other upstream 354024 91826849 ~ 91847400 (+) True G203551
TU230248 other upstream 529525 91668836 ~ 91671899 (+) True G203438
TU230224 other upstream 577131 91622001 ~ 91624293 (+) True G203414
TU231530 other downstream 478951 92681346 ~ 92682355 (+) False G204593
TU231531 other downstream 478951 92681346 ~ 92682313 (+) True G204593
TU232035 other downstream 635029 92837424 ~ 92838127 (+) False LOC110499942
TU232439 other downstream 1168998 93371393 ~ 93388550 (+) False G205404
TU232451 other downstream 1168998 93371393 ~ 93388550 (+) False G205404

Expression Profile