RNA id: TU231344


Basic Information

Item Value
RNA id TU231344
length 1421
lncRNA type read_through
GC content 0.42
exon number 2
gene id G204427
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92330141 ~ 92443833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatcacaaccggccgtgattgggagtcccatagggcggcgcacaattggcccagcgtcgtccgggtttggctggggtaggctgtcattgtaaatgagaatttgttcttaactgaattgccaggttaaatatatatatttttaaatgtgcgTGTTTCTTTGTTGGTGAAATGGtgctttatttatttaaacaGCTCAGGACATCTGCTGGTATATGTATCATGTACGTAAAAATGTCATTTCCATGACTTCTTCTGTCCGTTTCTATGCAATAATTGACCACATCTCCAACTCATCAAGCATTAATCTAAAAACACCTGCATTACAATGAAAATATTTACTGCAAGACTGCAAGGTTCCTCTAACCTTCTTTGTCTGCATCGATAGGAATCATATGCCTATTTTTCacatatatattttataacatatacactaccgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcacattttttgtccattaaaataacatcaaattgatcagaaatacagtgtagacatggttaatgctGTAGCAtattcacatacacacattgtTTGGTGTGTATTCCCCAATCACTGATGTCAAACTGATTAAATTAAGTTGTGTGAAGTACCTTTCACTTTGTTTTAATACTTGTCAATGTAAAGATACCTTTTCATAGTAAAACTGGAAGAATTTAAATAACCTCAAGCTTTTGAgaaatgagtagatgtgtccttGCTGAATCGCTACCAAATTGTTGTTTATTGTGGATTGTCTTCATATTATCATGACCTTCCCCACCCAGACCATGATTAACCAAAAAGACATGAGATCCCTCTCAAGAGTACCTTGGCAGTAAGTTCAACATTCTGGTCAATTCCTATATCCTAACAAATGAACATTCCCATAATCCCCCTCTGTAATGCTTCCTTAGGGCAGTATTCTGACTTGAGATCCGCAACCTTAACTCAGATTTCAGTGCAAATCGCCCATTGACGTCAACAAATGATTTACACGGAAATCTGAGTTACTTGTGCCTTTTTCAACTCTGAATGGTTCCCCATAGTAACCAGATGGAACCTaaacacagcagagagacagggagacatttATAAACTATACTGTAGCAATGGGGTGGTAGTTGGGTCTAGGTCTAATCAGACTTGTCCTTTTTCTTTGGTGTAACTTTACTGGCTACAGCAGACCCTACCGCCCCCACTCCCCCCGTCACCATGGAAACGCTGCCCTTGACCAATCCCACGCCGGCGGCCGGCACGCTGGTCACCACCGTCTTGGTGATGTCATAGCTCTTACAGCCCACCCAGGCCACGCCTCCCCATGTCGCTCCGACCGCCCCTTTGGTCATGTTGAAGAGACCGCCGGTCACCCTCCAGATGACCCCCGCCTCGGTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231221 lncRNA upstream 56265 92233292 ~ 92300447 (+) True G204313
TU231220 lncRNA upstream 121566 92233292 ~ 92235146 (+) False G204313
TU231219 lncRNA upstream 124803 92231710 ~ 92231909 (+) True G204312
TU231216 lncRNA upstream 128371 92228077 ~ 92228341 (+) True G204309
TU231193 lncRNA upstream 147159 92209299 ~ 92209553 (+) True G204287
TU231515 lncRNA downstream 42226 92444157 ~ 92444434 (+) True G204578
TU231536 lncRNA downstream 69375 92471306 ~ 92471516 (+) True G204598
TU231542 lncRNA downstream 75071 92477002 ~ 92480233 (+) False G204601
TU231548 lncRNA downstream 83449 92485380 ~ 92494219 (+) False G204601
TU231544 lncRNA downstream 91287 92493218 ~ 92495492 (+) True G204601
XM_021576894.2 mRNA upstream 204889 92139080 ~ 92151823 (+) True LOC110499833
XM_021576886.2 mRNA upstream 226964 92123060 ~ 92129748 (+) False LOC110499816
XM_021576880.2 mRNA upstream 226964 92123081 ~ 92129748 (+) True LOC110499816
XM_021576866.2 mRNA upstream 240301 92086314 ~ 92116411 (+) False LOC110499798
XM_021576970.2 mRNA downstream 52394 92454325 ~ 92460616 (+) True LOC110499906
XM_036959148.1 mRNA downstream 113893 92515824 ~ 92680198 (+) True LOC110502389
XM_036959163.1 mRNA downstream 240099 92642030 ~ 92643329 (+) True LOC118943603
XM_036959172.1 mRNA downstream 262894 92664825 ~ 92669744 (+) True LOC118943605
XM_036959188.1 mRNA downstream 294251 92696182 ~ 92799984 (+) False LOC110499936
TU231132 other upstream 196809 92157275 ~ 92159903 (+) True G204240
TU230483 other upstream 331970 92021755 ~ 92024742 (+) True G203646
TU230367 other upstream 509312 91826849 ~ 91847400 (+) True G203551
TU230248 other upstream 684813 91668836 ~ 91671899 (+) True G203438
TU230224 other upstream 732419 91622001 ~ 91624293 (+) True G203414
TU231530 other downstream 279415 92681346 ~ 92682355 (+) False G204593
TU231531 other downstream 279415 92681346 ~ 92682313 (+) True G204593
TU232035 other downstream 435493 92837424 ~ 92838127 (+) False LOC110499942
TU232439 other downstream 969462 93371393 ~ 93388550 (+) False G205404
TU232451 other downstream 969462 93371393 ~ 93388550 (+) False G205404

Expression Profile