RNA id: TU231530



Basic Information


Item Value
RNA id TU231530
length 1010
RNA type TUCP
GC content 0.46
exon number 1
gene id G204593
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92681346 ~ 92682355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggaaaataagtatttggtcaataacaaaagtttatctcaatactttgatatataccctttgttggcaatgacagaggtcaaacgttttctgtaagtcttcacaaggttttcacacactgttgctggtattttggcccattcctccatgcagatctcctctagagcagtgatgttttggggctgttgctgggcaacacggactttcaactccctccaaagattttctatggggttgagatatggagactggctaggccactccaggaccttgaaatgcttcttacaatgccactccttcgttgcccgggcggtgtgtttaggatcattgtcatgctgaaagacccagccacgtttcatcttcaatgcctttgctgatggaaggaggttttcactcaaaatctcacgatacatggccccattcattctttcctttacacggatcagtcgtcctgttccctttgcagaaaaacagccccaaagcatgatgtttccacccccatgcttcacagtaggtacggtgctccaaacatgacgagttgagtttttaccaaaaagttatatttttgtttcatctgaccatatgacattctcccaatcttcttctggatcatccaaatgctctctagcaaacttcagacgggcctggacatgtactggcttaagcaggggacacgtctggcactgcaggatttgagtccctggcggcgtagtgtgttactgatggtaggctttgttcctatagtcccagctctctgcaggtcattcactaggtccccccgtgtggttctgggatttttgctcactgttcttgtgatcattttgaccccacggggtgagatcttgcgtggcgcccgagatcgagggagattatcagtggtcttgtatgtcttccatttcctaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU231666 lncRNA upstream 24100 92657038 ~ 92657246 (+) True G204704
TU231663 lncRNA upstream 31200 92649906 ~ 92650146 (+) True G204701
TU231653 lncRNA upstream 42195 92638936 ~ 92639151 (+) True G204695
TU231638 lncRNA upstream 53370 92627754 ~ 92627976 (+) True G204686
TU231635 lncRNA upstream 57104 92623981 ~ 92624242 (+) True G204683
TU231528 lncRNA downstream 339 92682694 ~ 92683249 (+) True G204591
TU231840 lncRNA downstream 1490 92683845 ~ 92684139 (+) True G204840
TU231912 lncRNA downstream 100062 92782417 ~ 92782902 (+) True G204909
TU232034 lncRNA downstream 156733 92839088 ~ 92839327 (+) True LOC110499942
TU232042 lncRNA downstream 163551 92845906 ~ 92846227 (+) True G205028
XM_036959148.1 mRNA upstream 1148 92515824 ~ 92680198 (+) True LOC110502389
XM_036959172.1 mRNA upstream 11602 92664825 ~ 92669744 (+) True LOC118943605
XM_036959163.1 mRNA upstream 38017 92642030 ~ 92643329 (+) True LOC118943603
XM_021576970.2 mRNA upstream 220730 92454325 ~ 92460616 (+) True LOC110499906
XM_021576940.2 mRNA upstream 288961 92388109 ~ 92392385 (+) True LOC110499877
XM_036959188.1 mRNA downstream 13827 92696182 ~ 92799984 (+) False LOC110499936
XM_036959199.1 mRNA downstream 14543 92696898 ~ 92799984 (+) False LOC110499936
XM_036959174.1 mRNA downstream 46201 92728556 ~ 92799984 (+) False LOC110499936
XM_036959178.1 mRNA downstream 46201 92728556 ~ 92799984 (+) False LOC110499936
XM_036959203.1 mRNA downstream 46201 92728556 ~ 92799984 (+) False LOC110499936
TU231132 other upstream 521443 92157275 ~ 92159903 (+) True G204240
TU230483 other upstream 656604 92021755 ~ 92024742 (+) True G203646
TU230367 other upstream 833946 91826849 ~ 91847400 (+) True G203551
TU230248 other upstream 1009447 91668836 ~ 91671899 (+) True G203438
TU230224 other upstream 1057053 91622001 ~ 91624293 (+) True G203414
TU232035 other downstream 155069 92837424 ~ 92838127 (+) False LOC110499942
TU232439 other downstream 689038 93371393 ~ 93388550 (+) False G205404
TU232451 other downstream 689038 93371393 ~ 93388550 (+) False G205404
TU232456 other downstream 689038 93371393 ~ 93388550 (+) False G205404
TU232452 other downstream 695380 93377735 ~ 93385888 (+) False G205404

Expression Profile