RNA id: TU231835


Basic Information

Item Value
RNA id TU231835
length 529
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G204838
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92682666 ~ 92683230 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTAACCTGCATAAAATGTTGGTATCCATACAAGTATTGTGGACTTACAAATACTTCTCTTCCTGCGATCTCAATAATAATATTTTCATCTAAAAGTAAAATTAAATGATTTGTAGCACAAAATTACAGCAACATAGAAGCATGAAAAGGAAGTTGACAAAAAAAGGAGAGTGATTGTTTATCTGTGAAGAATAAAACAAGAGGACATTTTGGATCTGACACCTGTTAACTGGAATTTACTGCATCTTAGCATGTCCCATGTAGCCTGGGATTCCAGACCGCAGCATACTACAGTTCACTATTATTTCACACTGAAACCTGAAAGAGTTGTATTCATCCGGGATTTGTAGGCTGTTCGATTGGAACCCTACGGGGCAAAGTAGCTTTTAAAACTTTACCCATTAGGGGCCACGGTACAGAAGCACAGCCCAATCTGCTGGTGAATTAACTTTCCTTCAAACTCTCTGCACTTCAGATGCcttagtatatacagtgggggaaaaaagtatttagtcagccaccaattgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231833 lncRNA downstream 1523 92677585 ~ 92681179 (-) True G204837
TU231826 lncRNA downstream 11141 92671355 ~ 92671561 (-) True G204833
TU231825 lncRNA downstream 11673 92670809 ~ 92671029 (-) True G204832
TU231824 lncRNA downstream 16462 92664788 ~ 92666240 (-) True G204831
TU231822 lncRNA downstream 17978 92664449 ~ 92664724 (-) True G204829
TU231962 lncRNA upstream 63315 92746545 ~ 92748161 (-) True G204958
TU231993 lncRNA upstream 113152 92796382 ~ 92796939 (-) True G204987
TU232017 lncRNA upstream 133867 92817097 ~ 92817325 (-) True G205006
TU232099 lncRNA upstream 155437 92838667 ~ 92839690 (-) True G205079
TU232104 lncRNA upstream 164666 92847896 ~ 92848299 (-) True G205084
XM_021576959.2 mRNA downstream 243070 92398054 ~ 92439632 (-) False LOC110499897
LOC110499887 mRNA downstream 253968 92427643 ~ 92428734 (-) True LOC110499887
XM_036959107.1 mRNA downstream 417683 92233431 ~ 92265019 (-) False cry2
XM_036959109.1 mRNA downstream 417683 92233431 ~ 92265019 (-) True cry2
XM_036959112.1 mRNA downstream 421583 92233431 ~ 92261119 (-) False cry2
XM_036959225.1 mRNA upstream 186616 92869846 ~ 92881298 (-) True LOC110499952
XR_005038829.1 mRNA upstream 404031 93087261 ~ 93090465 (-) False LOC110499968
XM_036934431.1 mRNA upstream 493080 93176310 ~ 93199900 (-) True LOC118936876
XM_021577074.2 mRNA upstream 654667 93337897 ~ 93372952 (-) True LOC110499982
XM_021577085.2 mRNA upstream 793831 93477061 ~ 93606905 (-) True LOC110499989
TU231426 other downstream 243101 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 894599 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 1091653 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 2241277 90377557 ~ 90441425 (-) True G202279
TU228163 other downstream 3072812 89606837 ~ 89609890 (-) True LOC110499346
TU232213 other upstream 278814 92962044 ~ 92962934 (-) True G205192
TU234006 other upstream 1629194 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 1629297 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 1630160 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 1644680 94327910 ~ 94328183 (-) True G206750

Expression Profile