RNA id: TU232044


Basic Information

Item Value
RNA id TU232044
length 201
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G205030
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92847526 ~ 92847726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataatcaaatcaaatgtgtttatatagcccttcttacatcagctgatatctcaaagtgctgtatagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaagcctggagaaaaaaaaaactagagaagaaccaggctaggaggggtggccagtcctcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232042 lncRNA upstream 1299 92845906 ~ 92846227 (+) True G205028
TU232034 lncRNA upstream 8199 92839088 ~ 92839327 (+) True LOC110499942
TU231912 lncRNA upstream 64624 92782417 ~ 92782902 (+) True G204909
TU231840 lncRNA upstream 163387 92683845 ~ 92684139 (+) True G204840
TU231528 lncRNA upstream 164277 92682694 ~ 92683249 (+) True G204591
TU232048 lncRNA downstream 4930 92852656 ~ 92852864 (+) True G205034
TU232055 lncRNA downstream 20156 92867882 ~ 92868304 (+) True G205041
TU232069 lncRNA downstream 34306 92882032 ~ 92882335 (+) True G205050
TU232089 lncRNA downstream 63673 92911399 ~ 92912151 (+) True G205070
TU232152 lncRNA downstream 74614 92922340 ~ 92922550 (+) True G205132
XM_021618510.2 mRNA upstream 1720 92841792 ~ 92845806 (+) True LOC110533914
XM_021577002.2 mRNA upstream 8086 92837196 ~ 92839440 (+) False LOC110499942
XM_036959178.1 mRNA upstream 47542 92728556 ~ 92799984 (+) False LOC110499936
trnap-ugg-3 mRNA downstream 187264 93034990 ~ 93035061 (+) True trnap-ugg-3
trnap-agg-3 mRNA downstream 190440 93038166 ~ 93038237 (+) True trnap-agg-3
trnap-ugg-4 mRNA downstream 192991 93040717 ~ 93040788 (+) True trnap-ugg-4
trnap-ugg-5 mRNA downstream 202590 93050316 ~ 93050387 (+) True trnap-ugg-5
trnap-agg-4 mRNA downstream 205808 93053534 ~ 93053605 (+) True trnap-agg-4
TU232035 other upstream 9399 92837424 ~ 92838127 (+) False LOC110499942
TU231530 other upstream 165171 92681346 ~ 92682355 (+) False G204593
TU231531 other upstream 165213 92681346 ~ 92682313 (+) True G204593
TU231132 other upstream 687623 92157275 ~ 92159903 (+) True G204240
TU230483 other upstream 822784 92021755 ~ 92024742 (+) True G203646
TU232439 other downstream 523667 93371393 ~ 93388550 (+) False G205404
TU232451 other downstream 523667 93371393 ~ 93388550 (+) False G205404
TU232456 other downstream 523667 93371393 ~ 93388550 (+) False G205404
TU232452 other downstream 530009 93377735 ~ 93385888 (+) False G205404
TU232556 other downstream 553891 93401617 ~ 93402234 (+) True G205482

Expression Profile