RNA id: TU232114



Basic Information


Item Value
RNA id TU232114
length 218
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G205094
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92866743 ~ 92866960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gattTTTAGAACTGTAGTTGTCTTCTTATCTGCTCACCTTCTGTGTTATTGATCCTTAATTCATTCTCACAGGACCCAGGATCATGTTTGTTGTTGAATCATTCATGATTTTCTCATTTTCTAAAGTCTTAATTCAGTCCAATCCAATCTACTCAAATGAAGCAGAATGAGCATTGCTGGGACAAAGTTGACAAAATAAACTGAGGTACATGCTGTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU232105 lncRNA downstream 17865 92848661 ~ 92848878 (-) True G205085
TU232104 lncRNA downstream 18444 92847896 ~ 92848299 (-) True G205084
TU232099 lncRNA downstream 27053 92838667 ~ 92839690 (-) True G205079
TU232017 lncRNA downstream 49418 92817097 ~ 92817325 (-) True G205006
TU231993 lncRNA downstream 69804 92796382 ~ 92796939 (-) True G204987
TU232120 lncRNA upstream 8762 92875722 ~ 92876185 (-) True G205100
TU232137 lncRNA upstream 33920 92900880 ~ 92901083 (-) True G205117
TU232141 lncRNA upstream 40117 92907077 ~ 92907282 (-) True G205121
TU232092 lncRNA upstream 44507 92911467 ~ 92911812 (-) True G205073
TU232091 lncRNA upstream 44974 92911934 ~ 92912283 (-) True G205072
XM_021576959.2 mRNA downstream 427111 92398054 ~ 92439632 (-) False LOC110499897
LOC110499887 mRNA downstream 438009 92427643 ~ 92428734 (-) True LOC110499887
XM_036959107.1 mRNA downstream 601724 92233431 ~ 92265019 (-) False cry2
XM_036959109.1 mRNA downstream 601724 92233431 ~ 92265019 (-) True cry2
XM_036959112.1 mRNA downstream 605624 92233431 ~ 92261119 (-) False cry2
XM_036959225.1 mRNA upstream 2886 92869846 ~ 92881298 (-) True LOC110499952
XR_005038829.1 mRNA upstream 220301 93087261 ~ 93090465 (-) False LOC110499968
XM_036934431.1 mRNA upstream 309350 93176310 ~ 93199900 (-) True LOC118936876
XM_021577074.2 mRNA upstream 470937 93337897 ~ 93372952 (-) True LOC110499982
XM_021577085.2 mRNA upstream 610101 93477061 ~ 93606905 (-) True LOC110499989
TU231426 other downstream 427142 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 1078640 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 1275694 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 2425318 90377557 ~ 90441425 (-) True G202279
TU228163 other downstream 3256853 89606837 ~ 89609890 (-) True LOC110499346
TU232213 other upstream 95084 92962044 ~ 92962934 (-) True G205192
TU234006 other upstream 1445464 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 1445567 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 1446430 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 1460950 94327910 ~ 94328183 (-) True G206750

Expression Profile