RNA id: TU232089



Basic Information


Item Value
RNA id TU232089
length 753
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G205070
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92911399 ~ 92912151 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTCTAGACAAACAATACCTTGGCAACATACAGTATGATTTGGAGACAATGTGCTGTGGTTTCCTAAAACTGGCAACATTCATTAAAATCATTCACTTCTAGGCACTTTCTGAAGAAAACAATGAGATGCATCTGTAAAAAACAATGAGATGcatctgaaaaaaaaaacatctcagtAGGACAGCAGGACACACCTCTGGGGGTAACAGCAGTGTTGGGTGTGACGCTTTACGTAATCAGATTACTTTAATGAGTAACGGAGTAAAGTAACATGTTTATAAAATTGGGTAATATTACTACAGTTACTTTGTCAAACAACACGTGCGTTACTTTCAGAATCACATCTCTACCGAGCGCGTGTTTCCATGACCCGATCTTGACTTTTTTTCCACATTTAATACTTGAGCGAGTGGAGAAAGGCTAGAAATGTATAAAGGGCACATCTTTGCCACTGATTTATTCTGTGATAGCAAAGTCCACAGAGGGCTTTCCCATCTAGTGGCAAGTGTGCcttctatacatctctatgggtcATTGTACGTGCATCTATAAACAGAATGTAGCAGATGTTTGGCTTACAGTGTATATGGCTAATTAAGCAGCCCATATGATAACTCCGCACTGGCACAGGAAAGCAACGCCGCAGACGAAAGGAGAAACTGGTGGCCAAATCTGAGTTAGTAATCAGCCTATCTTTGGCAGAGCCTTGCTGCCTCTGACAGTCAAAGAAAACGGTGAAATTGTGTGATTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU232069 lncRNA upstream 29064 92882032 ~ 92882335 (+) True G205050
TU232055 lncRNA upstream 43095 92867882 ~ 92868304 (+) True G205041
TU232048 lncRNA upstream 58535 92852656 ~ 92852864 (+) True G205034
TU232044 lncRNA upstream 63673 92847526 ~ 92847726 (+) True G205030
TU232042 lncRNA upstream 65172 92845906 ~ 92846227 (+) True G205028
TU232152 lncRNA downstream 10189 92922340 ~ 92922550 (+) True G205132
TU232195 lncRNA downstream 39830 92951981 ~ 92952552 (+) True G205174
TU232196 lncRNA downstream 40463 92952614 ~ 92952820 (+) True G205175
TU232208 lncRNA downstream 48114 92960265 ~ 92960560 (+) True G205187
TU232211 lncRNA downstream 50183 92962334 ~ 92962553 (+) True G205190
XM_021618510.2 mRNA upstream 65593 92841792 ~ 92845806 (+) True LOC110533914
XM_021577002.2 mRNA upstream 71959 92837196 ~ 92839440 (+) False LOC110499942
XM_036959178.1 mRNA upstream 111415 92728556 ~ 92799984 (+) False LOC110499936
trnap-ugg-3 mRNA downstream 122839 93034990 ~ 93035061 (+) True trnap-ugg-3
trnap-agg-3 mRNA downstream 126015 93038166 ~ 93038237 (+) True trnap-agg-3
trnap-ugg-4 mRNA downstream 128566 93040717 ~ 93040788 (+) True trnap-ugg-4
trnap-ugg-5 mRNA downstream 138165 93050316 ~ 93050387 (+) True trnap-ugg-5
trnap-agg-4 mRNA downstream 141383 93053534 ~ 93053605 (+) True trnap-agg-4
TU232035 other upstream 73272 92837424 ~ 92838127 (+) False LOC110499942
TU231530 other upstream 229044 92681346 ~ 92682355 (+) False G204593
TU231531 other upstream 229086 92681346 ~ 92682313 (+) True G204593
TU231132 other upstream 751496 92157275 ~ 92159903 (+) True G204240
TU230483 other upstream 886657 92021755 ~ 92024742 (+) True G203646
TU232439 other downstream 459242 93371393 ~ 93388550 (+) False G205404
TU232451 other downstream 459242 93371393 ~ 93388550 (+) False G205404
TU232456 other downstream 459242 93371393 ~ 93388550 (+) False G205404
TU232452 other downstream 465584 93377735 ~ 93385888 (+) False G205404
TU232556 other downstream 489466 93401617 ~ 93402234 (+) True G205482

Expression Profile