RNA id: TU232196


Basic Information

Item Value
RNA id TU232196
length 207
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G205175
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92952614 ~ 92952820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtggaagctgtaggcgcatatattttctctcgtcttaaacaattcattgaatggcggacaaatatttttgttttgtttttggtaaacagttttaccagggatttttactcctaaacacgttctgttatagccacagacccaatttaaccagttttagaaacttcagaatgttttctatccacacatacttatcatatgcatatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232195 lncRNA upstream 62 92951981 ~ 92952552 (+) True G205174
TU232152 lncRNA upstream 30064 92922340 ~ 92922550 (+) True G205132
TU232089 lncRNA upstream 40463 92911399 ~ 92912151 (+) True G205070
TU232069 lncRNA upstream 70279 92882032 ~ 92882335 (+) True G205050
TU232055 lncRNA upstream 84310 92867882 ~ 92868304 (+) True G205041
TU232208 lncRNA downstream 7445 92960265 ~ 92960560 (+) True G205187
TU232211 lncRNA downstream 9514 92962334 ~ 92962553 (+) True G205190
TU232228 lncRNA downstream 22163 92974983 ~ 92975264 (+) True G205207
TU232229 lncRNA downstream 22722 92975542 ~ 92975844 (+) True G205208
TU232269 lncRNA downstream 56777 93009597 ~ 93009826 (+) True G205248
XM_021618510.2 mRNA upstream 106808 92841792 ~ 92845806 (+) True LOC110533914
XM_021577002.2 mRNA upstream 113174 92837196 ~ 92839440 (+) False LOC110499942
XM_036959178.1 mRNA upstream 152630 92728556 ~ 92799984 (+) False LOC110499936
trnap-ugg-3 mRNA downstream 82170 93034990 ~ 93035061 (+) True trnap-ugg-3
trnap-agg-3 mRNA downstream 85346 93038166 ~ 93038237 (+) True trnap-agg-3
trnap-ugg-4 mRNA downstream 87897 93040717 ~ 93040788 (+) True trnap-ugg-4
trnap-ugg-5 mRNA downstream 97496 93050316 ~ 93050387 (+) True trnap-ugg-5
trnap-agg-4 mRNA downstream 100714 93053534 ~ 93053605 (+) True trnap-agg-4
TU232035 other upstream 114487 92837424 ~ 92838127 (+) False LOC110499942
TU231530 other upstream 270259 92681346 ~ 92682355 (+) False G204593
TU231531 other upstream 270301 92681346 ~ 92682313 (+) True G204593
TU231132 other upstream 792711 92157275 ~ 92159903 (+) True G204240
TU230483 other upstream 927872 92021755 ~ 92024742 (+) True G203646
TU232439 other downstream 418573 93371393 ~ 93388550 (+) False G205404
TU232451 other downstream 418573 93371393 ~ 93388550 (+) False G205404
TU232456 other downstream 418573 93371393 ~ 93388550 (+) False G205404
TU232452 other downstream 424915 93377735 ~ 93385888 (+) False G205404
TU232556 other downstream 448797 93401617 ~ 93402234 (+) True G205482

Expression Profile