RNA id: TU232213


Basic Information

Item Value
RNA id TU232213
length 891
RNA type TUCP
GC content 0.38
exon number 1
gene id G205192
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92962044 ~ 92962934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tCTTAAAGATATcgataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcattacactgaacacaccatccccactgtcaaacatggtggtgacagcttcatggtttgggcctgcttttcttcagcagggaccgggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaatgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacatgaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagcccgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaattgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatcaaataaatgtcgttccacttcatgattgtgtccaacttgttgttgattcttcgcaaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatatatctgaatgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232192 lncRNA downstream 12261 92949558 ~ 92949783 (-) True G205171
TU232148 lncRNA downstream 42352 92919479 ~ 92919692 (-) True G205128
TU232091 lncRNA downstream 49761 92911934 ~ 92912283 (-) True G205072
TU232092 lncRNA downstream 50232 92911467 ~ 92911812 (-) True G205073
TU232141 lncRNA downstream 54762 92907077 ~ 92907282 (-) True G205121
TU232215 lncRNA upstream 1164 92964098 ~ 92964393 (-) True G205194
TU232220 lncRNA upstream 4208 92967142 ~ 92967356 (-) True G205199
TU232224 lncRNA upstream 7557 92970491 ~ 92970701 (-) True G205203
TU232225 lncRNA upstream 8381 92971315 ~ 92971556 (-) True G205204
TU232245 lncRNA upstream 26052 92988986 ~ 92989193 (-) True G205224
XM_036959225.1 mRNA downstream 80746 92869846 ~ 92881298 (-) True LOC110499952
XM_021576959.2 mRNA downstream 522412 92398054 ~ 92439632 (-) False LOC110499897
LOC110499887 mRNA downstream 533310 92427643 ~ 92428734 (-) True LOC110499887
XM_036959107.1 mRNA downstream 697025 92233431 ~ 92265019 (-) False cry2
XM_036959109.1 mRNA downstream 697025 92233431 ~ 92265019 (-) True cry2
XR_005038829.1 mRNA upstream 124327 93087261 ~ 93090465 (-) False LOC110499968
XM_036934431.1 mRNA upstream 213376 93176310 ~ 93199900 (-) True LOC118936876
XM_021577074.2 mRNA upstream 374963 93337897 ~ 93372952 (-) True LOC110499982
XM_021577085.2 mRNA upstream 514127 93477061 ~ 93606905 (-) True LOC110499989
XM_036959302.1 mRNA upstream 796709 93759643 ~ 93890433 (-) False LOC110502409
TU231426 other downstream 522443 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 1173941 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 1370995 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 2520619 90377557 ~ 90441425 (-) True G202279
TU228163 other downstream 3352154 89606837 ~ 89609890 (-) True LOC110499346
TU234006 other upstream 1349490 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 1349593 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 1350456 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 1364976 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 1653981 94616915 ~ 94617232 (-) True G207244

Expression Profile