RNA id: TU232228



Basic Information


Item Value
RNA id TU232228
length 282
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G205207
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92974983 ~ 92975264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cactaacattgagtggctgctgccaacatactgcctcaaatctctagccacttagcaattaaaaattggatgtaataaatgtatcattagtcactttaaacaatgccactttatataatgtttacataccctacattactcatctcacatgtatatactgtactctatgccatctactgcatcttgcctatgccattctgccATCGCTCAcgcatatatttatatgtacatattcttattaattccttttcacttgtgtgtataaggtagttgttgtgaaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU232211 lncRNA upstream 12430 92962334 ~ 92962553 (+) True G205190
TU232208 lncRNA upstream 14423 92960265 ~ 92960560 (+) True G205187
TU232196 lncRNA upstream 22163 92952614 ~ 92952820 (+) True G205175
TU232195 lncRNA upstream 22431 92951981 ~ 92952552 (+) True G205174
TU232152 lncRNA upstream 52433 92922340 ~ 92922550 (+) True G205132
TU232229 lncRNA downstream 278 92975542 ~ 92975844 (+) True G205208
TU232269 lncRNA downstream 34333 93009597 ~ 93009826 (+) True G205248
TU232271 lncRNA downstream 42454 93017718 ~ 93018104 (+) True G205250
TU232276 lncRNA downstream 53643 93028907 ~ 93029108 (+) True G205255
TU232291 lncRNA downstream 72860 93048124 ~ 93067004 (+) True G205269
XM_021618510.2 mRNA upstream 129177 92841792 ~ 92845806 (+) True LOC110533914
XM_021577002.2 mRNA upstream 135543 92837196 ~ 92839440 (+) False LOC110499942
XM_036959178.1 mRNA upstream 174999 92728556 ~ 92799984 (+) False LOC110499936
trnap-ugg-3 mRNA downstream 59726 93034990 ~ 93035061 (+) True trnap-ugg-3
trnap-agg-3 mRNA downstream 62902 93038166 ~ 93038237 (+) True trnap-agg-3
trnap-ugg-4 mRNA downstream 65453 93040717 ~ 93040788 (+) True trnap-ugg-4
trnap-ugg-5 mRNA downstream 75052 93050316 ~ 93050387 (+) True trnap-ugg-5
trnap-agg-4 mRNA downstream 78270 93053534 ~ 93053605 (+) True trnap-agg-4
TU232035 other upstream 136856 92837424 ~ 92838127 (+) False LOC110499942
TU231530 other upstream 292628 92681346 ~ 92682355 (+) False G204593
TU231531 other upstream 292670 92681346 ~ 92682313 (+) True G204593
TU231132 other upstream 815080 92157275 ~ 92159903 (+) True G204240
TU230483 other upstream 950241 92021755 ~ 92024742 (+) True G203646
TU232439 other downstream 396129 93371393 ~ 93388550 (+) False G205404
TU232451 other downstream 396129 93371393 ~ 93388550 (+) False G205404
TU232456 other downstream 396129 93371393 ~ 93388550 (+) False G205404
TU232452 other downstream 402471 93377735 ~ 93385888 (+) False G205404
TU232556 other downstream 426353 93401617 ~ 93402234 (+) True G205482

Expression Profile