RNA id: TU232229



Basic Information


Item Value
RNA id TU232229
length 303
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G205208
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92975542 ~ 92975844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTGGGACGAAGAACTGAGGGCTCATACAGACAGCTCCAGACTTGTTGTCATATTTCCCTTGAAGCTACTGCTGTTTACATTTCCTTTCTGACATTAAAGAGCAACATTGTTTTGGTTAGACTGACAGAGAGGTTTTAAATTGCACTACCATTAAAATGACATGCTAAAGTTAAACTTGTTCGTTGAGTTCAAACGTGTTTCTCAAACCTGCATAGGTTTAACCCTTCAAATCACCTAAAGTTTTTTTTTGCGTAAAGCGataccaccattaccaccattATCACCATTACCATCATTACCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU232228 lncRNA upstream 278 92974983 ~ 92975264 (+) True G205207
TU232211 lncRNA upstream 12989 92962334 ~ 92962553 (+) True G205190
TU232208 lncRNA upstream 14982 92960265 ~ 92960560 (+) True G205187
TU232196 lncRNA upstream 22722 92952614 ~ 92952820 (+) True G205175
TU232195 lncRNA upstream 22990 92951981 ~ 92952552 (+) True G205174
TU232269 lncRNA downstream 33753 93009597 ~ 93009826 (+) True G205248
TU232271 lncRNA downstream 41874 93017718 ~ 93018104 (+) True G205250
TU232276 lncRNA downstream 53063 93028907 ~ 93029108 (+) True G205255
TU232291 lncRNA downstream 72280 93048124 ~ 93067004 (+) True G205269
TU232315 lncRNA downstream 111419 93087263 ~ 93090300 (+) True G205291
XM_021618510.2 mRNA upstream 129736 92841792 ~ 92845806 (+) True LOC110533914
XM_021577002.2 mRNA upstream 136102 92837196 ~ 92839440 (+) False LOC110499942
XM_036959178.1 mRNA upstream 175558 92728556 ~ 92799984 (+) False LOC110499936
trnap-ugg-3 mRNA downstream 59146 93034990 ~ 93035061 (+) True trnap-ugg-3
trnap-agg-3 mRNA downstream 62322 93038166 ~ 93038237 (+) True trnap-agg-3
trnap-ugg-4 mRNA downstream 64873 93040717 ~ 93040788 (+) True trnap-ugg-4
trnap-ugg-5 mRNA downstream 74472 93050316 ~ 93050387 (+) True trnap-ugg-5
trnap-agg-4 mRNA downstream 77690 93053534 ~ 93053605 (+) True trnap-agg-4
TU232035 other upstream 137415 92837424 ~ 92838127 (+) False LOC110499942
TU231530 other upstream 293187 92681346 ~ 92682355 (+) False G204593
TU231531 other upstream 293229 92681346 ~ 92682313 (+) True G204593
TU231132 other upstream 815639 92157275 ~ 92159903 (+) True G204240
TU230483 other upstream 950800 92021755 ~ 92024742 (+) True G203646
TU232439 other downstream 395549 93371393 ~ 93388550 (+) False G205404
TU232451 other downstream 395549 93371393 ~ 93388550 (+) False G205404
TU232456 other downstream 395549 93371393 ~ 93388550 (+) False G205404
TU232452 other downstream 401891 93377735 ~ 93385888 (+) False G205404
TU232556 other downstream 425773 93401617 ~ 93402234 (+) True G205482

Expression Profile