RNA id: TU233041


Basic Information

Item Value
RNA id TU233041
length 500
lncRNA type intronic
GC content 0.53
exon number 2
gene id G205919
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93302124 ~ 93302803 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTGACTATTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGAACTGTTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGAACTGTTGTGACTATTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGTGACTATTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGTGACTATTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGAACTTTTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGTGACTGTTGTGACTATTGTAACTGTTGTGACTATTGTAACTGTTGTGACTATTGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232956 lncRNA downstream 37541 93169875 ~ 93264583 (-) True G205839
TU232989 lncRNA downstream 77058 93221568 ~ 93225066 (-) True G205872
TU232990 lncRNA downstream 77185 93221734 ~ 93224939 (-) True G205873
TU232947 lncRNA downstream 109278 93150945 ~ 93192846 (-) True G205831
TU232907 lncRNA downstream 209847 93091698 ~ 93092277 (-) True G205792
TU233054 lncRNA upstream 13374 93316177 ~ 93316415 (-) True G205932
TU233069 lncRNA upstream 83186 93385989 ~ 93387209 (-) True G205946
TU233118 lncRNA upstream 121900 93424703 ~ 93424920 (-) True G205993
TU233135 lncRNA upstream 142599 93445402 ~ 93446002 (-) True G206010
TU233136 lncRNA upstream 144004 93446807 ~ 93447084 (-) True G206011
XM_036934431.1 mRNA downstream 102224 93176310 ~ 93199900 (-) True LOC118936876
XR_005038829.1 mRNA downstream 211659 93087261 ~ 93090465 (-) False LOC110499968
XM_036959225.1 mRNA downstream 420826 92869846 ~ 92881298 (-) True LOC110499952
XM_021576959.2 mRNA downstream 862492 92398054 ~ 92439632 (-) False LOC110499897
XM_021577074.2 mRNA upstream 35094 93337897 ~ 93372952 (-) True LOC110499982
XM_021577085.2 mRNA upstream 174258 93477061 ~ 93606905 (-) True LOC110499989
XM_036959302.1 mRNA upstream 456840 93759643 ~ 93890433 (-) False LOC110502409
XM_036959293.1 mRNA upstream 456840 93759643 ~ 93925168 (-) True LOC110502409
XM_036959320.1 mRNA upstream 631612 93934415 ~ 94040658 (-) False LOC110499999
TU232213 other downstream 339190 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 862523 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 1514021 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 1711075 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 2860699 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 1009621 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 1009724 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 1010587 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 1025107 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 1314112 94616915 ~ 94617232 (-) True G207244

Expression Profile