RNA id: TU233069


Basic Information

Item Value
RNA id TU233069
length 1041
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G205946
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93385989 ~ 93387209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACTATGGATTGAGCAGCGTTTAGATGTGCTACGGTGGTCTGTGTGTGcatgagcgagagcgagagagagagagagagagagagagagagagagagagagagagagagagagaggtggggccgAGTGCTGAGTCTGTAATGTAACCTGCTTGTTTAGTTAATGGCTGAGAACATTGGCCACACTGATAGTGGTCTGGGGTCACAGAGGTCATGGACGGACATCAGCTAATGAAGctcccctgcccctctctctctttcaatctctaaGTCCATCCATCTCTatgtcccctctctcTCCATCCATCTctatgtcccctctctctctctctccatccatatctgcccctctctctctctctccatcctattcccctctctccatccttatctatgtaccctctctctctctctctctctgtccatctctatgtccactctttttctctctgtccatctctatgttctcaatccctctccctcaatcaaatcaaaatcaaattaaatcaaatgtatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaatccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggcttggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctgcctgtgccgggtggagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggtcaaataataataatcataggcagaactgttgaaactggagcagcagcacggccaggtggaatggggacagcaaggagtcatcatgtcaggtagtcctgaggcatggtcctagggctcaggtcctccgagagagagaaagaaagagagaaagagagaattagagagagcatacttaaattcacacaggacactggataggacaggagaagtactccagatataacaaactgaacctagccccccgacacataaactactgcagcataaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233054 lncRNA downstream 69574 93316177 ~ 93316415 (-) True G205932
TU233041 lncRNA downstream 83186 93302124 ~ 93302803 (-) True G205919
TU232956 lncRNA downstream 121406 93169875 ~ 93264583 (-) True G205839
TU232989 lncRNA downstream 160923 93221568 ~ 93225066 (-) True G205872
TU232990 lncRNA downstream 161050 93221734 ~ 93224939 (-) True G205873
TU233118 lncRNA upstream 37494 93424703 ~ 93424920 (-) True G205993
TU233135 lncRNA upstream 58193 93445402 ~ 93446002 (-) True G206010
TU233136 lncRNA upstream 59598 93446807 ~ 93447084 (-) True G206011
TU233137 lncRNA upstream 63112 93450321 ~ 93450530 (-) True G206012
TU233155 lncRNA upstream 87224 93474433 ~ 93475406 (-) True G206030
XM_021577074.2 mRNA downstream 13037 93337897 ~ 93372952 (-) True LOC110499982
XM_036934431.1 mRNA downstream 186089 93176310 ~ 93199900 (-) True LOC118936876
XR_005038829.1 mRNA downstream 295524 93087261 ~ 93090465 (-) False LOC110499968
XM_036959225.1 mRNA downstream 504691 92869846 ~ 92881298 (-) True LOC110499952
XM_021576959.2 mRNA downstream 946357 92398054 ~ 92439632 (-) False LOC110499897
XM_021577085.2 mRNA upstream 89852 93477061 ~ 93606905 (-) True LOC110499989
XM_036959302.1 mRNA upstream 372434 93759643 ~ 93890433 (-) False LOC110502409
XM_036959293.1 mRNA upstream 372434 93759643 ~ 93925168 (-) True LOC110502409
XM_036959320.1 mRNA upstream 547206 93934415 ~ 94040658 (-) False LOC110499999
XM_036959326.1 mRNA upstream 547206 93934415 ~ 94085908 (-) False LOC110499999
TU232213 other downstream 423055 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 946388 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 1597886 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 1794940 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 2944564 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 925215 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 925318 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 926181 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 940701 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 1229706 94616915 ~ 94617232 (-) True G207244

Expression Profile