RNA id: TU232556



Basic Information


Item Value
RNA id TU232556
length 618
RNA type TUCP
GC content 0.56
exon number 1
gene id G205482
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93401617 ~ 93402234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttttcaatgaggagactctcagttagatagcaaatgctcagttttttccaaaaagattctttgtgtattagaaatagctccgttttgtacatcacatttggctacaaaaaaaccccgaaaattcagtcctcaaaacgcgaacttttttccaaattaactccataatatcgactgaaaacatggcaaacgtggtttagaatcaatcctcaaggtgtttttcacatatctcttcgatgatatatcgttcgtggaagcatggtttctcctctcaatcaaatggaaaaaaacTTGcagctggctttgcgcaccaatttcgacgcaggacaccaggcggacacttggaaaatgtagtctcttatggtcaatcttccaatgatatgcctacaaatgcgtcacaatgctgccgacatcttggggaaacggcagcaggtctaagcttattcctgtcgcattcacagccatataaggagacattagaaaacagagcttcagaaattctgctcatttcctgtttgacgtttcatcttggtttcgcctgtagaatgagttctggggcacttacagacaatatctttgcagattctgaaacttcagagtgttttctttcaaaagaagaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU232438 lncRNA upstream 13067 93377735 ~ 93388550 (+) False G205404
TU232457 lncRNA upstream 13067 93377735 ~ 93388550 (+) True G205404
TU232470 lncRNA upstream 63903 93337154 ~ 93337714 (+) True G205405
TU232505 lncRNA upstream 96446 93303657 ~ 93305171 (+) True G205433
TU232379 lncRNA upstream 206303 93178524 ~ 93195314 (+) True G205349
TU232560 lncRNA downstream 6866 93409100 ~ 93409698 (+) False G205486
TU232561 lncRNA downstream 6866 93409100 ~ 93409698 (+) False G205486
TU232562 lncRNA downstream 6866 93409100 ~ 93409698 (+) False G205486
TU232563 lncRNA downstream 6866 93409100 ~ 93409698 (+) False G205486
TU232564 lncRNA downstream 6866 93409100 ~ 93409698 (+) False G205486
XM_036959279.1 mRNA upstream 24712 93373307 ~ 93376905 (+) True LOC110502396
XM_021577061.2 mRNA upstream 66099 93270955 ~ 93335518 (+) False LOC110499974
XM_036959260.1 mRNA upstream 66099 93308703 ~ 93335518 (+) True LOC110499974
XM_021577034.2 mRNA upstream 316732 93068836 ~ 93084885 (+) False ric8a
XM_036934440.1 mRNA downstream 220799 93623033 ~ 93624085 (+) True LOC118936880
XM_036934451.1 mRNA downstream 313855 93716089 ~ 93721762 (+) True LOC118936881
XM_021577124.2 mRNA downstream 743429 94145663 ~ 94149467 (+) False LOC110500011
XM_036959470.1 mRNA downstream 743519 94145753 ~ 94149467 (+) True LOC110500011
XM_036959421.1 mRNA downstream 748197 94150431 ~ 94172796 (+) False dnm1l
TU232439 other upstream 13067 93371393 ~ 93388550 (+) False G205404
TU232451 other upstream 13067 93371393 ~ 93388550 (+) False G205404
TU232456 other upstream 13067 93371393 ~ 93388550 (+) False G205404
TU232452 other upstream 15729 93377735 ~ 93385888 (+) False G205404
TU232035 other upstream 563490 92837424 ~ 92838127 (+) False LOC110499942
TU232785 other downstream 393848 93796082 ~ 93798936 (+) True G205683
TU232791 other downstream 408126 93810360 ~ 93812169 (+) True G205688
TU233428 other downstream 538252 93940486 ~ 93941471 (+) True G206285
TU233546 other downstream 698745 94100979 ~ 94101872 (+) False G206389
TU233547 other downstream 698745 94100979 ~ 94101872 (+) False G206389

Expression Profile