RNA id: TU232607



Basic Information


Item Value
RNA id TU232607
length 203
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G205520
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93471622 ~ 93471824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGATGACCTGAGAGAATAGGAAGTTTAGTAGCActgtaattaattaattaaacccTGTCTTCCCTGCTCTTATGTtcttttctctttccctttcGGTCTTTGACACtcatacctctctccctaccttctctttcttcctctctgtttttataatgcatgccagatgtgcattgaagtatAGATTGAACTTACAattttaata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU232592 lncRNA upstream 21017 93450179 ~ 93450605 (+) True G205506
TU232568 lncRNA upstream 61924 93409100 ~ 93409698 (+) False G205486
TU232610 lncRNA downstream 4906 93476730 ~ 93477442 (+) True G205523
TU232612 lncRNA downstream 9130 93480954 ~ 93481155 (+) True G205525
TU232620 lncRNA downstream 20099 93491923 ~ 93492126 (+) True G205533
TU232623 lncRNA downstream 23889 93495713 ~ 93496054 (+) True G205536
TU232629 lncRNA downstream 33216 93505040 ~ 93505270 (+) True G205542
XM_036959279.1 mRNA upstream 94717 93373307 ~ 93376905 (+) True LOC110502396
XM_021577061.2 mRNA upstream 136104 93270955 ~ 93335518 (+) False LOC110499974
XM_036959260.1 mRNA upstream 136104 93308703 ~ 93335518 (+) True LOC110499974
XM_021577034.2 mRNA upstream 386737 93068836 ~ 93084885 (+) False ric8a
XM_036934440.1 mRNA downstream 151209 93623033 ~ 93624085 (+) True LOC118936880
XM_036934451.1 mRNA downstream 244265 93716089 ~ 93721762 (+) True LOC118936881
XM_021577124.2 mRNA downstream 673839 94145663 ~ 94149467 (+) False LOC110500011
XM_036959470.1 mRNA downstream 673929 94145753 ~ 94149467 (+) True LOC110500011
XM_036959421.1 mRNA downstream 678607 94150431 ~ 94172796 (+) False dnm1l
TU232556 other upstream 69388 93401617 ~ 93402234 (+) True G205482
TU232439 other upstream 83072 93371393 ~ 93388550 (+) False G205404
TU232785 other downstream 324258 93796082 ~ 93798936 (+) True G205683
TU232791 other downstream 338536 93810360 ~ 93812169 (+) True G205688
TU233428 other downstream 468662 93940486 ~ 93941471 (+) True G206285
TU233546 other downstream 629155 94100979 ~ 94101872 (+) False G206389
TU233547 other downstream 629155 94100979 ~ 94101872 (+) False G206389

Expression Profile