RNA id: TU233297



Basic Information


Item Value
RNA id TU233297
length 605
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G206167
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93754101 ~ 93754705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAGAGATTTttatgagtctctgtgtgtggagtaaaggtgatctagagtttttttttcacttctagttgcacaggtgacatgctggtagaaattaggtcaaatggatttcagttttcctgcaatTAAGTCACCGGCCActagcttatcatgaggtattctacatcaggcgagcagaaccttgagacttccttaatattagatatcgcacaccagctgttattaacAAAGAGGGATAACATCTGATTGTGAAAACAGATTCAATATTTTCACTAAACTAttaattttaaatgttttaactcTGAACTCTTGCTTCTATATACATCATGTatgaatggtactgtatctagcagcagcacccactcgtagcacgcgctccagcaggtatgtctcactggtcacccccaaagccaattcctcctttggtcgtctttccttccagttctctgctgcccatgactggaacgaattgcaaaaatctctgaagctggagactcgcatctccctcactagctttaagcaccagctgtcagagcagcttacagatcactaaACCTgcacttagcctatctgtaaacagcccatctatctacctacctcatcccca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU233266 lncRNA downstream 90315 93662436 ~ 93663786 (-) True G206136
TU233240 lncRNA downstream 141068 93612821 ~ 93613033 (-) True G206111
TU233234 lncRNA downstream 149133 93604764 ~ 93604968 (-) True G206105
TU233230 lncRNA downstream 152329 93601529 ~ 93601772 (-) True G206101
TU233226 lncRNA downstream 157746 93596147 ~ 93596355 (-) True G206097
TU233322 lncRNA upstream 4353 93759058 ~ 93759270 (-) True G206192
TU233346 lncRNA upstream 65446 93820151 ~ 93820585 (-) True G206215
TU233366 lncRNA upstream 96191 93850896 ~ 93851736 (-) True G206235
TU233378 lncRNA upstream 123450 93878155 ~ 93879136 (-) True G206247
TU233381 lncRNA upstream 125251 93879956 ~ 93881494 (-) True G206249
XM_021577085.2 mRNA downstream 147196 93477061 ~ 93606905 (-) True LOC110499989
XM_021577074.2 mRNA downstream 381149 93337897 ~ 93372952 (-) True LOC110499982
XM_036934431.1 mRNA downstream 554201 93176310 ~ 93199900 (-) True LOC118936876
XR_005038829.1 mRNA downstream 663636 93087261 ~ 93090465 (-) False LOC110499968
XM_036959225.1 mRNA downstream 872803 92869846 ~ 92881298 (-) True LOC110499952
XM_036959302.1 mRNA upstream 4938 93759643 ~ 93890433 (-) False LOC110502409
XM_036959293.1 mRNA upstream 4938 93759643 ~ 93925168 (-) True LOC110502409
XM_036959320.1 mRNA upstream 179710 93934415 ~ 94040658 (-) False LOC110499999
XM_036959326.1 mRNA upstream 179710 93934415 ~ 94085908 (-) False LOC110499999
XM_036959311.1 mRNA upstream 179710 93934415 ~ 94085913 (-) False LOC110499999
TU232213 other downstream 791167 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 1314500 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 1965998 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 2163052 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 3312676 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 557719 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 557822 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 558685 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 573205 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 862210 94616915 ~ 94617232 (-) True G207244

Expression Profile