RNA id: TU232810



Basic Information


Item Value
RNA id TU232810
length 686
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G205706
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93833515 ~ 93835840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTTATGATGTGCCACTGCTGCCTCTCAATCACAGCTCCACTCACATAGGCATGACTGATTAGCCTAGCCTAAGGGGCATCTCTAAAAAAGTCATTTCATCCTTCCTGTCAATGATAATGTGTTACGTAACAATGGGGACGGGGATCCCATCCAATCCCGTCCAATCCACTCCACTCACATCCAAACTGGACAGCGGCCTCTCTGCTGACCACAGTGCCGTAGTCGTTGGTGGCCTTACAGGTGTACTTCCCAACGTGTTTGTTCTTGATGGGGTTAGAGATGACCAGGTTGCCTCCCACCAAAGTGTAGTGGTTGTCTTCATCCTGGTCTATATTCCTGCTGTTTAATCTCGTGTATGTGGCAGGTGGGTTGGCTCGTGCTCGACAGCTCATGGTGATTTTGGCCTCAGGTGACTCCTCGGGGTAGATGGTGTCGACCGGCTGATCCTCAAACACCGGCCCGTAACCTGTAGCATCgtctgaggagagagacacacatcgTTAATGACTTAGCACCTAACGGTTTAGACAAACAGTACATGACATCATcgtaacacacacactggcacattACCTGTAGCAtcgtctgaggagagagagagagagagagagagagagagacagcgacagacagacagacagacagacagacagacagacagacagacagacagacagacagacag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU232786 lncRNA upstream 35301 93796451 ~ 93798214 (+) True G205684
TU232766 lncRNA upstream 75986 93757319 ~ 93757529 (+) True G205665
TU232751 lncRNA upstream 107512 93725559 ~ 93726003 (+) True G205650
TU232691 lncRNA upstream 218776 93614493 ~ 93614739 (+) True G205599
TU232686 lncRNA upstream 230000 93603240 ~ 93603515 (+) True G205594
TU232827 lncRNA downstream 20821 93856661 ~ 93925170 (+) True G205722
TU232835 lncRNA downstream 35022 93870862 ~ 93876863 (+) False G205728
TU232834 lncRNA downstream 40144 93875984 ~ 93876863 (+) True G205728
TU232855 lncRNA downstream 63378 93899218 ~ 93899527 (+) True G205748
TU233410 lncRNA downstream 92476 93928316 ~ 93928704 (+) True G206276
XM_036934451.1 mRNA upstream 111753 93716089 ~ 93721762 (+) True LOC118936881
XM_036934440.1 mRNA upstream 209430 93623033 ~ 93624085 (+) True LOC118936880
XM_036959279.1 mRNA upstream 456610 93373307 ~ 93376905 (+) True LOC110502396
XM_021577061.2 mRNA upstream 497997 93270955 ~ 93335518 (+) False LOC110499974
XM_021577124.2 mRNA downstream 309823 94145663 ~ 94149467 (+) False LOC110500011
XM_036959470.1 mRNA downstream 309913 94145753 ~ 94149467 (+) True LOC110500011
XM_036959421.1 mRNA downstream 314591 94150431 ~ 94172796 (+) False dnm1l
XM_036959424.1 mRNA downstream 314591 94150431 ~ 94172796 (+) False dnm1l
XM_036959430.1 mRNA downstream 314592 94150432 ~ 94172796 (+) False dnm1l
TU232791 other upstream 21346 93810360 ~ 93812169 (+) True G205688
TU232785 other upstream 34579 93796082 ~ 93798936 (+) True G205683
TU232556 other upstream 431281 93401617 ~ 93402234 (+) True G205482
TU232439 other upstream 444965 93371393 ~ 93388550 (+) False G205404
TU233428 other downstream 104646 93940486 ~ 93941471 (+) True G206285
TU233546 other downstream 265139 94100979 ~ 94101872 (+) False G206389
TU233547 other downstream 265139 94100979 ~ 94101872 (+) False G206389
TU233549 other downstream 265139 94100979 ~ 94101872 (+) False G206389
TU233551 other downstream 265139 94100979 ~ 94101872 (+) False G206389

Expression Profile