RNA id: TU233423


Basic Information

Item Value
RNA id TU233423
length 5420
lncRNA type read_through
GC content 0.43
exon number 3
gene id G206284
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93934433 ~ 93940323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAACCTTGAAACTGTTTTTGAATAAGAATACAACCGTTTTGCAATACTGTCACAAAGTGGATGAGTTTGGCAGACTTTGTGCTGAATAACCCACATGAAGCAGAAAACCACAATGTTATAGTACATTATAGTACTTATCTAACACTCCAAAGTACATTAAATCTCAATGTTTACTGAGTACTGTATGGTTTCATTTAATACAGAGAAGTGACATTTCAGAAATACACAACTAAATTGCTGACAAATGAAAAAaactcaaatttgaactcatggGCAACATTTGTCCTGTTAGTTACAATAAAGTACAATGTTCACAGctaagaaaaaagaaaaaaaaaagaaaaaaatgcacacatatatatatatatatatatatatagtagccTATATTGAACACAGCTCTCTCAAACTATTTCATGCAGTTCTTCCTTTCAGGTTGTCATCAAATTTTGTAATTTAGGTGAACCATCCCTTTAATTAAGCTCTTCTAGCTGTGTTTCTCTGTACATTCAAAATGATATATTTACAAATTCAACAAATAATcgacatttctgtaaaaaaaaaacaacaacaacaatgtaaAACTTGATGCAAGTTAAGAAAAGAAAATAGCTTGCGAACCCTTGTCACCTCAAATGTACTTCCTACGAGTGAGCACCTCTTTCCTAGCATGACTAATATCCCCTCaacaacagcacacacacacgtgcacacggaCACACGCACCACAAGAAGAGCCATGAGGTCACCATCTGACAAGAAGAGCCATAAGGTCACCATCAGGTGAGATCATGTGAGTTGCAAACCACAGGAAATGAGGTCACATGCAGGTCAAAGGTCATGAGGATGACGTCATGAGGGCGTGTATAGCATCAGCATTTGCATTCGCagcaaaataataatacatttaggagctctctgtctgcatatacatactgtacaaaATCCTGCACTGTAAATTCAACCTTTACTTTTGTTACTGTAAATTCAACCTTTACCTTTGTTACTGTAAATTCAACATTTACCTTTGCTACTGTAAATTCAACCTTTACATTTGTTACTGTAAATTCAACTTTTACCTTTGTTACTGTAAATTCAACCTTTACCTTTGTTACTGTAAATTCAACATTTACTTTTGTTACTGCAAATTCAACCTTTACCTTTGTTACTGTAATTTCAACTTTTACCTTTGCTACTGTAAATTCAACCTTTACCTTTGTTACCTTAAATTCAACCTTTAACTTTGCTACTGTAAATTCAACCTTTACCTTTGTTACTGTAAATTCAACCTTTACCTCTGTTACTGTAAATTCAACCTTTACCTTTGTTACTGTAAATTCAACCTTTCACTATGTGACTGTTAATTCAACCTTTCACTATGTTACTATAAATTCAACCTTTCCCTTTGTTACTGTAAATTCAACCTTTACCTTTGTTACTGTAAATTCAACCTTTACCTTTGTTACTGTAAATTCAACTTTTCATTATGTGACTGTTAATTCAACCTTTCTGCAACAACAACTGTATAAACTGTACAAACTGCCCATCTTGCAAAAATACATAGAATAATAGCCATACATTTAGTAACTCATTTCACCACTAGGTCCACAAAGACATTGATGCCTCTTTATGGTGGCCCTGAGGGACAAAAAGTACCTCTAACATACACAATAATATCAAGATAACGCTTTGACTGTAAAAACAATATGGTAAATGATACAAATGTGAACCGCATAGTAGTCCAAGATAGACAATATCTTCTGTGTAATATACTAATTAGTGTTAATCTCAATATGTTAATATATGTATGTACATAATTTCAGGATTTCCATGCACTGTATAAGAATCGTAGTCCTCCAGGAGTATCTAGTATCTCCAATGTGTATCTTATGTGTCTGTGACAGCAGGGTGGTTCTCAGTGGTGGTTCTGGGTGCAGATGGGTGGGGcatgtaatgatgatgatgatgatgatgatgatgataagccACACAATGATGTGATTGCCCTGTGATATGGGGGGATGGAACAGTCACCGCAGTGTCTCCTATTGACTGGGAGGATAAACGTCTAATTAGCTACGCAAAGAATATATAAGAATCTGCAACACTGCCTAGTGGCCTGGCTACACAAAAAAAGGTGCATATACTGTAGCGCCACCTAGTGGCCTGGCTGACCAGTTGACTGGCTACACAAAGGAGTTCATAGCGGTTGTGTTAACCGGGGAGTGGGCCTCAGCAGTTTCCCTGATGGAGCTCTTTCCGCTGTACTGCCCAATAAAAGACCCATCCTCGTTGAACTGTCCATCTCCACCTGCATAGTCAACTAAACTTTCGTCACTGCTGTCCCTGTGCACCGTCCCGTTAGAAGGTGTGCGGCTCCCTTTTAACGGCTTATGGTCCTCAGTGTCACTAGGAGAAAAGGACATGCAGGTGTTATGATGACATGAGAATGTAAACAAGGAGTTTAGtgcatggccttttttttttttttagatggaGCGTTTGAAGGGCTGCCAATTAATTTGACTTTGATTTCCCAGGTCAAAGGTAGTTTTGTAATTTCCTTATTAATATGGAAAGTAGGATAGCCCAAGGCCTGATCCATTGATCTATCCCATCAGTCTACAATTTTAGTTACTTATGATAATATTGTATAAATACTTAAATATGTACTCAAATAGTACTACATCTGATAGTCATTAACATTTCTGTCCACTGCAGCAGATTCATTTTCTGTAGCAGAATTTACTTTGCCCCAagtcaaaaaaaaaaatggagacaTGATCGATTAGTTGGTTCCATCACGCAACAGGGGAATTCAAGCAAAATCATACCTGTTCTGAATTCCTCATGAAAGCATAACACGAGGTGGAAAATAACAACATGTGCTGTGTTGCTAGACACAAACTTTTCTCACCAACAAAGGTTGCAATGAGAAACAGAAAATCCAAGGCAATgatataaataaacaaatatgaaAAGCACATTTTCAGCCAAATGACTCAacgcaaaaaaatacaaattattaCAATTTTGCAAACAAATGAAGAAACAgcaaataacgtttttttttttttttttaaaacattagtTAGACAACATTGAAATCGATGTGAGGTTATGATTCCTGACAGTGAATAGCAGGTGAACACTCCTTCATAAAGCTTCAATAATGATTATTCATAATTTACTACGTGTTATTACCATTCATAACAGGTTATGTCAGCTTATATCACAATGCATAAAAATGACTACCGGGATCAGGCTACAATCTACAGTTAACTGATCAAAATCACTGCATATGGCACAAAAACATTATCCTATGATATGTTATGACATCACTATGTAGGCTTTATGACATCTCATAACCGTTTAGAAGACACATAAGGACAGTGGTGTAATCCTGGGATGGATTTTACAACAAGCCTTTAGTTACTGTTTATCTAACAGACATCACAGTATAGCAGCTCTTTGGTTCCTCCTCTCACACCAGTCTAGCAGTACCCTTCCTTACCTTGCCTGACACCTAGCAGTACCCTTCCTTACCTTGCCTGACACCTAGCAGTACCCTTCCTTACCTTGCCTGACACCTAGCAGTACCCTTCCTTACCTTGGCTGACACCTAGCAGTACCCTTCCTTACCTTGGTTAACACCTAGCAGTACCCTTCCTTACCTTGCCTGACACCTAGCAGTACTCTGCAGTCACACCAGAACAGGTCGGTAGAGTTAGGTTGTTATAGTACAGGACTTACTGCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTTGTTATAGTACAGGACTTACTTCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTGGTTATAGTACAGGACTTACTGCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTGGTTATAGTACAGGACTTACTGCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTGGTTATAGTACAGGACTTACTGCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTTGTTATAGTACAGGACTTACTGCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTTGTTATAGTACAGGACTTACTGCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTTGTTATAGTACAGGACTTACTTCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTTGTTATAGTACAGGACTTACTGCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTGGTTATAGTACAGGACTTACTGCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTTGTTATAGTACAGGACTTACTGCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTTGTTATAGTACAGGACTTACTTCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTTGTTATAGTACAGGACTTACTGCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTGGTTATAGTACAGGACTTACTGCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTGGTTATAGTACAGGACTTACTGCAGTCACACCAGAACAGGTCAGTAGAGTTAGGTTGTTATGTCTCTATTGACATAAAGCTCTAGTCCACCTTGGTTGGAATAATGGCATCGATGGAAAGATTGATATCTCTTCACAAAGGCACTCTAATATCATACATTTAGCCTTGTGATATATTATCTAATACTTGTTTTTTTAACGATTTAAACTGTGTTATATTGTCTATTATTTTCTTATTTGAATGGACAGATTAGAGTTTCTCTCATGTTAGGATCACAAACTAGATAGAGTTATGATGTGGACAATAGCATTTAGCCTTGTATAAACTTTAAATAGCATCCTTTTAGCCCTGGGATTGACAGTACTCTCAGTGCTGGCCATGTCCCTCCAACAGTAGCTTCATACTGGataacatatactgtacatatctagGATTTCATCCAATACATTATTGCCTACAGTAATTTTCTTATAAGATCTTCACCACATTACGCACATCAGACAACATTATATATCCATAATCTATAGATGTATGTATCACAGCATATCATGTATATTATATAACATATTTATGTTTAAATATATGATACAAAAAGTAATAATAGCAAATACAAAAGCAAAACCCATCAGATAAATTGGGGATAAAGCTGGACCAGTACAAAATAAGGTTTCCAAAACGCTATACATAAATAAAGTGCTTCACCGTTCTTCATATTTGCATGCGTGGTTGGAAAAGCAAGCAGTCTAGAAAAATGATTAGAGGATGCTAGTGCAAGCATATCTAGATTACTGCAGATAGTTAGAGCTAATATGGACTGGGATGAGTGCCCTCACTGTATGCTTATGTATGCAAACATTCATTTACTaagcatgtacagtggggcaaaaaagtatttagtcagccaccaattgtgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233410 lncRNA upstream 5815 93928316 ~ 93928704 (+) True G206276
TU232827 lncRNA upstream 9349 93856661 ~ 93925170 (+) True G205722
TU233469 lncRNA downstream 49120 93989443 ~ 93990119 (+) True G206325
TU233531 lncRNA downstream 143431 94083754 ~ 94084199 (+) True G206377
TU233544 lncRNA downstream 157922 94098245 ~ 94100411 (+) True G206388
TU233587 lncRNA downstream 203261 94143584 ~ 94143821 (+) True G206418
TU233588 lncRNA downstream 204136 94144459 ~ 94144932 (+) True G206419
XM_036934451.1 mRNA upstream 212757 93716089 ~ 93721762 (+) True LOC118936881
XM_036934440.1 mRNA upstream 310434 93623033 ~ 93624085 (+) True LOC118936880
XM_036959279.1 mRNA upstream 557614 93373307 ~ 93376905 (+) True LOC110502396
XM_021577061.2 mRNA upstream 599001 93270955 ~ 93335518 (+) False LOC110499974
XM_021577124.2 mRNA downstream 205340 94145663 ~ 94149467 (+) False LOC110500011
XM_036959470.1 mRNA downstream 205430 94145753 ~ 94149467 (+) True LOC110500011
XM_036959421.1 mRNA downstream 210108 94150431 ~ 94172796 (+) False dnm1l
XM_036959424.1 mRNA downstream 210108 94150431 ~ 94172796 (+) False dnm1l
XM_036959430.1 mRNA downstream 210109 94150432 ~ 94172796 (+) False dnm1l
TU232791 other upstream 122350 93810360 ~ 93812169 (+) True G205688
TU232785 other upstream 135583 93796082 ~ 93798936 (+) True G205683
TU232556 other upstream 532285 93401617 ~ 93402234 (+) True G205482
TU232456 other upstream 545969 93371393 ~ 93388550 (+) False G205404
TU233428 other downstream 163 93940486 ~ 93941471 (+) True G206285
TU233546 other downstream 160656 94100979 ~ 94101872 (+) False G206389
TU233547 other downstream 160656 94100979 ~ 94101872 (+) False G206389
TU233549 other downstream 160656 94100979 ~ 94101872 (+) False G206389
TU233551 other downstream 160656 94100979 ~ 94101872 (+) False G206389

Expression Profile