RNA id: TU233858



Basic Information


Item Value
RNA id TU233858
length 314
lncRNA type intronic
GC content 0.43
exon number 2
gene id G206619
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94039060 ~ 94039523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagagagagagaggaggttggtAATTAtactgtgttagagagagaggggaggttggTAATGAtactgtgttagagagagagagagaggaggctgattaTGAtactgtgttagagagagagaggaggctgattaTGGtactgtgttagagagagagaggaggttggtAATTATActgtgttggagagagaggggaggttggTAATGAtactgtgttagagagagagagaggaggctaaTTATGAtactgtgttagagagagagagaggaggctggtaATGATAttgtattagagagagagaggtatctgCTTCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU233789 lncRNA downstream 97571 93940477 ~ 93941489 (-) True G206565
TU233770 lncRNA downstream 99113 93934420 ~ 93939947 (-) False G206564
TU233884 lncRNA upstream 48817 94088340 ~ 94088677 (-) True G206645
TU233830 lncRNA upstream 58713 94098236 ~ 94100426 (-) False G206605
TU233831 lncRNA upstream 58713 94098236 ~ 94099932 (-) True G206605
TU233917 lncRNA upstream 93326 94132849 ~ 94134112 (-) False G206669
TU233915 lncRNA upstream 93969 94133492 ~ 94134411 (-) True G206669
XR_005038844.1 mRNA downstream 98686 93937585 ~ 93940374 (-) True LOC118943611
XM_036959293.1 mRNA downstream 113892 93759643 ~ 93925168 (-) True LOC110502409
XM_036959302.1 mRNA downstream 148627 93759643 ~ 93890433 (-) False LOC110502409
XM_021577085.2 mRNA downstream 432155 93477061 ~ 93606905 (-) True LOC110499989
XM_021577074.2 mRNA downstream 666108 93337897 ~ 93372952 (-) True LOC110499982
XM_036959407.1 mRNA upstream 61425 94100948 ~ 94141281 (-) False LOC110500006
XM_036959412.1 mRNA upstream 61425 94100948 ~ 94141288 (-) True LOC110500006
XM_021577141.2 mRNA upstream 132358 94171881 ~ 94178540 (-) False LOC110500013
XM_021577139.2 mRNA upstream 132358 94171881 ~ 94180442 (-) True LOC110500013
XM_036959504.1 mRNA upstream 144676 94184199 ~ 94221104 (-) False LOC110500043
TU232213 other downstream 1076126 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 1599459 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 2250957 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 2448011 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 3597635 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 272901 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 273004 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 273867 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 288387 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 577392 94616915 ~ 94617232 (-) True G207244

Expression Profile