RNA id: TU233830


Basic Information

Item Value
RNA id TU233830
length 2191
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G206605
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94098236 ~ 94100426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACActtggaggggagggggagagagggaggtctgGCAACATCACCAACATAATGTTGCTTATTATCATACTCTGTAAGCCAGAGTAGATAACTTACCAATAGCCCACTAATATATCTATATAAGgctctggttagaagtagtgcattatgtaggagatgaggtgccatttggaacataacTGTGGACTGACTGTTCTCCAATGAAGCACTTTTTCACCTTTCTAAAAAGATCACAACCATGTATATCCTGACACTGTATAAGAGATATATCTGGGATATATTTTGGATTTAAATCGTTTTTAGTTTGTTTTAACTTTGACTTGAACCGAATCTGCCACCAATAACTGATTTTTAAAGGTTAGGACCATAAACAAACATAtaccattttttttgggggggggggggggggggggggataaccaTCTTGTCATGTTCAGTGGTTGGTTATCAATGTTTTACTTGAATGTATGCCTCAGAGATAGAATAATGGCTGGTCACTTGACATTTCTGTTTCTTGTACTTTTTAACACCAATGCAGCTAGTGGTCTTTCATTTGATTGTTTTAATGGTGACGGTGATATTGGTACATTCATCAGGGTGCAGATTTTTTtgacatatactgtataaatCGTTCAAAAAAATGTACCAATGTATTTAGAGGAAGATGTTAGCCACTGACCTGGTTAGTTCACACATACAGCTGCTTTAGATCACAGAGTAGAGTCCTAATCAGGATCCATGGCTGTAAGATGCTAAATGTTCACTCCTCACTAGTTTGATTTTAAGAATGCGTTACAGAACAATGACTTGACTGTTGTATTACTATTGTGAAATTGTAGCTATAGTTTGAAATGCATTAATATTTAAAATGCTCCTGAATGAAGTCTTCTGCCTCTGTATTATTTACTTTTAAATACATGCTGATTTTATTTTTTAGCTTAGAGTAATTTTTATCCTTCTCTAATTTATTTGCATGAGCGATGCTGATGTTCTGCATCCACTAATAACAGGTTGTGAACACTTTCCTTTCTCCAATATGCTGTTTTCCAGACATGGGTTCAAGTACTATTTAAAACACTTGATCGGGATCTTCAGCACATACGAATTCAGGACATATTTTACGAATTGGCTTTCGTTACATATTCTACGAAACGGGTGCCGTTGTTGTACACACGAGcgctactttcaaaactactggctgaaattacaCAAAACCTTTTGTATAACGCATTTTTTTAAAGCTGTGCTTGATTCAGCTTGCATGGCATAATAGAACCAATAGGATAGTCCCAAAATGGCAAGCCCCGCCCACCCGCACTCCAGGAAGGCTAAAGCAAATGCTCACCGTATTTGAAAGATTTCCAATAgtaattgaacccaggtctgttatCTCCATCCTAGCTACCCTGAAGTGCTGGTTCTCCTGTGCTATGCTATagtctaccatgttgtgttattATTACTGCTAGTTTGAATCATGCCGGTGTAGCAGAGGGACTGTATTCTATTATCGGCTGCTGCTTACTGCACTGATACTGTTGCTCGGGAACTGTCACAGTAGTGCCTGTGGCAAGTGAACGATGATGACATAGCTTAAAGATCTTACACAGCATAGACTCATTTCAACTGTCAAACCCGAGTCCCGTATTCATCAAGCATCTCAGATTaggagtgctggtctaggatcaggtcctctctCCAGATAATCTAATTAATTACGGTCAAAAAAGTCAAACGCTGATCAGTAGTCTATAGTTCCCTACCAAGCAAGAAGGCAGTAAATTAGTTTGTCATTTTTGCTATGTTAAATACGTGCTTAATgatgtggacaagtatcctgtctctgtgttttggaGGAAATGGgggggtcatgttagcagtaacttcataaagttactgtgaaaccaaggtaaattcAAGCTGTTTTTCTCAGTTCCAcgctatgagcagttactgccttttttgcttggtagggcagtatgcTACTCTGAGATGTTTTAAATAGGGTCCCAGGTTGATGACTGTGTAGTCAGGATGATGTCTTCGGTCCCTCCGGAGTGATGAAGACCAAGATGGACAGAGATATTGACTTGATTTGTTTTAAATACCGTTCTCCTATTGATCCCAtgtaagcagtgtgtgtgttgaacATGTATATTGTGTAATTAAAATGCATCACTGAAACACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233884 lncRNA downstream 9559 94088340 ~ 94088677 (-) True G206645
TU233769 lncRNA downstream 12345 93976774 ~ 94085891 (-) True G206564
TU233858 lncRNA downstream 58713 94039060 ~ 94039523 (-) True G206619
TU233789 lncRNA downstream 156747 93940477 ~ 93941489 (-) True G206565
TU233783 lncRNA downstream 158289 93934420 ~ 93939947 (-) False G206564
TU233917 lncRNA upstream 32423 94132849 ~ 94134112 (-) False G206669
TU233915 lncRNA upstream 33066 94133492 ~ 94134411 (-) True G206669
TU233920 lncRNA upstream 42318 94142744 ~ 94143233 (-) True G206672
TU233921 lncRNA upstream 42991 94143417 ~ 94143763 (-) True G206673
TU233922 lncRNA upstream 44030 94144456 ~ 94144779 (-) True G206674
XM_036959367.1 mRNA downstream 12323 93934415 ~ 94085913 (-) False LOC110499999
XM_036959407.1 mRNA upstream 522 94100948 ~ 94141281 (-) False LOC110500006
XM_036959412.1 mRNA upstream 522 94100948 ~ 94141288 (-) True LOC110500006
XM_021577141.2 mRNA upstream 71455 94171881 ~ 94178540 (-) False LOC110500013
XM_021577139.2 mRNA upstream 71455 94171881 ~ 94180442 (-) True LOC110500013
XM_036959504.1 mRNA upstream 83773 94184199 ~ 94221104 (-) False LOC110500043
TU232213 other downstream 1135302 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 1658635 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 2310133 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 2507187 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 3656811 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 211998 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 212101 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 212964 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 227484 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 516489 94616915 ~ 94617232 (-) True G207244

Expression Profile