RNA id: TU233544


Basic Information

Item Value
RNA id TU233544
length 2167
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G206388
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94098245 ~ 94100411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGATGCATTTTAATTACACAATATACATgttcaacacacacactgcttacaTGGGATCAATAGGAGAACGGTATTTAAAACAAATCAAGTCAATATCTCTGTCCATCTTGGTCTTCATCACTCCGGAGGGACCGAAGACATCATCCTGACTACACAGTCATCAACCTGGGACCCTATTTAAAACATCTCAGAGTAgcatactgccctaccaagcaaaaaaggcagtaactgctcatagcgTGGAACTGAGAAAAACAGCTTgaatttaccttggtttcacagtaactttatgaagttactgctaacatgacccccCCATTTCCtccaaaacacagagacaggatacttgtccacatcATTAAGCACGTATTTAACATAGCAAAAATGACAAACTAATTTACTGCCTTCTTGCTTGGTAGGGAACTATAGACTACTGATCAGCGTTTGACTTTTTTGACCGTAATTAATTAGATTATCTGGagagaggacctgatcctagaccagcactcctAATCTGAGATGCTTGATGAATACGGGACTCGGGTTTGACAGTTGAAATGAGTCTATGCTGTGTAAGATCTTTAAGCTATGTCATCATCGTTCACTTGCCACAGGCACTACTGTGACAGTTCCCGAGCAACAGTATCAGTGCAGTAAGCAGCAGCCGATAATAGAATACAGTCCCTCTGCTACACCGGCATGATTCAAACTAGCAGTAATaataacacaacatggtagactATAGCATAGCACAGGAGAACCAGCACTTCAGGGTAGCTAGGATGGAGataacagacctgggttcaattacTATTGGAAATCTTTCAAATACGGTGAGCATTTGCTTTAGCCTTCCTGGAGTGCGGGTGGGCGGGGCTTGCCATTTTGGGACTATCCTATTGGTTCTATTATGCCATGCAAGCTGAATCAAGCACAGCTTTAAAAAAATGCGTTATACAAAAGGTTTTGtgtaatttcagccagtagttttgaaagtagcgCTCGTGTGTACAACAACGGCACCCGTTTCGTAGAATATGTAACGAAAGCCAATTCGTAAAATATGTCCTGAATTCGTATGTGCTGAAGATCCCGATCAAGTGTTTTAAATAGTACTTGAACCCATGTCTGGAAAACAGCATATTGGAGAAAGGAAAGTGTTCACAACCTGTTATTAGTGGATGCAGAACATCAGCATCGCTCATGCAAATAAATTAGAGAAGGATAAAAATTACTCTAAGCTAAAAAATAAAATCAGCATGTATTTAAAAGTAAATAATACAGAGGCAGAAGACTTCATTCAGGAGCATTTTAAATATTAATGCATTTCAAACTATAGCTACAATTTCACAATAGTAATACAACAGTCAAGTCATTGTTCTGTAACGCATTCTTAAAATCAAACTAGTGAGGAGTGAACATTTAGCATCTTACAGCCATGGATCCTGATTAGGACTCTACTCTGTGATCTAAAGCAGCTGTATGTGTGAACTAACCAGGTCAGTGGCTAACATCTTCCTCTAAATACATTGGTACATTTTTTTGAACGatttatacagtatatgtcaAAAAAATCTGCACCCTGATGAATGTACCAATATCACCGTCACCATTAAAACAATCAAATGAAAGACCACTAGCTGCATTGGTGTTAAAAAGTACAAGAAACAGAAATGTCAAGTGACCAGCCATTATTCTATCTCTGAGGCATACATTCAAGTAAAACATTGATAACCAACCACTGAACATGACAAGAtggttatcccccccccccccccccccccccaaaaaaaatggtaTATGTTTGTTTATGGTCCTAACCTTTAAAAATCAGTTATTGGTGGCAGATTCGGTTCAAGTCAAAGTTAAAACAAACTAAAAACGATTTAAATCCAAAATATATCCCAGATATATCTCTTATACAGTGTCAGGATATACATGGTTGTGATCTTTTTAGAAAGGTGAAAAAGTGCTTCATTGGAGAACAGTCAGTCCACAgttatgttccaaatggcacctcatctcctacataatgcactacttctaaccagagcCTTATATAGATATATTAGTGGGCTATTGGTAAGTTATCTACTCTGGCTTACAGAGTATGATAATAAGCAACATTATGTTGGTGATGTTGCcagacctccctctctccccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233531 lncRNA upstream 14046 94083754 ~ 94084199 (+) True G206377
TU233469 lncRNA upstream 108126 93989443 ~ 93990119 (+) True G206325
TU233423 lncRNA upstream 157922 93934519 ~ 93940323 (+) False G206284
TU233426 lncRNA upstream 157922 93934519 ~ 93940323 (+) True G206284
TU233420 lncRNA upstream 161325 93934433 ~ 93936920 (+) False G206284
TU233587 lncRNA downstream 43173 94143584 ~ 94143821 (+) True G206418
TU233588 lncRNA downstream 44048 94144459 ~ 94144932 (+) True G206419
TU233590 lncRNA downstream 57013 94157424 ~ 94158198 (+) True G206421
TU233595 lncRNA downstream 73649 94174060 ~ 94177373 (+) True G206426
TU233616 lncRNA downstream 130693 94231104 ~ 94231961 (+) True G206447
XM_036934451.1 mRNA upstream 376483 93716089 ~ 93721762 (+) True LOC118936881
XM_036934440.1 mRNA upstream 474160 93623033 ~ 93624085 (+) True LOC118936880
XM_036959279.1 mRNA upstream 721340 93373307 ~ 93376905 (+) True LOC110502396
XM_021577061.2 mRNA upstream 762727 93270955 ~ 93335518 (+) False LOC110499974
XM_021577124.2 mRNA downstream 45252 94145663 ~ 94149467 (+) False LOC110500011
XM_036959470.1 mRNA downstream 45342 94145753 ~ 94149467 (+) True LOC110500011
XM_036959421.1 mRNA downstream 50020 94150431 ~ 94172796 (+) False dnm1l
XM_036959424.1 mRNA downstream 50020 94150431 ~ 94172796 (+) False dnm1l
XM_036959430.1 mRNA downstream 50021 94150432 ~ 94172796 (+) False dnm1l
TU233428 other upstream 156774 93940486 ~ 93941471 (+) True G206285
TU232791 other upstream 286076 93810360 ~ 93812169 (+) True G205688
TU232785 other upstream 299309 93796082 ~ 93798936 (+) True G205683
TU232556 other upstream 696011 93401617 ~ 93402234 (+) True G205482
TU232452 other upstream 712357 93377735 ~ 93385888 (+) False G205404
TU233546 other downstream 568 94100979 ~ 94101872 (+) False G206389
TU233547 other downstream 568 94100979 ~ 94101872 (+) False G206389
TU233549 other downstream 568 94100979 ~ 94101872 (+) False G206389
TU233551 other downstream 568 94100979 ~ 94101872 (+) False G206389
TU233552 other downstream 568 94100979 ~ 94101872 (+) False G206389

Expression Profile