RNA id: TU233917


Basic Information

Item Value
RNA id TU233917
length 989
lncRNA type intronic
GC content 0.45
exon number 3
gene id G206669
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94132849 ~ 94134411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccgCCCCAGGTTTGTATGTGGGCCTATACACTGagtgacaaaacattaggaacaccttcctaatattgagttcgacctcagaacagcctcaattcctcCGGGCATGGACTCTCTAGTGtagaaagctttccacagggatgctggcccatgttgactccaatgtttccctcAGTTGTGTCAACTTGACTCGATGTCCTTCGGGTTGTGGAACATGCTTTATACACTTAGGAagctgttgagcttgaaaaacccggCAGCGTGGCAGTTCTTGacgcactcaaaccggtgcgcctggtacctactatcataccctgcTCTAAGGCACTTAGTTATTTTGTCTTGTCcgttcaccttctgaatggcacacatacagaaTACCTCTCAAGACTTAAACatcctcctttaacctgtctcctccccttcatctttaacctgtctcctccccttcatctttaacctgtctcctccccttcatctacactgattgaactgaatttaacaggtgacatcaatatgggatcatagcttttacctggtcagtctgtgtcatggaaagagcaggtgttcctaatgttttgtacactcagtgtatgttcccTTATCATCATGCAGGTTATTTACATTACACATACCCGTATCTGTAGGGACTGTCCCATTGGACAACTTAACCCAAGGCCATTGTTTCTGGCCTGAGGAAACATTGGTTAACCTCGTCAACAGTGATCAAGTGAGGATACAGAAGAGTGTTTTTAAAGTCTGTTCAGTTACAGTATAGTTATGTCAATCCACTGGTCACAGATGTTGCATGCCATTTCCTCTGACCTCTAAGGTGTTGTTTGTATTaaggtcaatgtgtgtgtgtgctggaggcATGACGTCTGTTCCACAGGGGTCATATGTACTAAAATGCGTACCCTACTGAATGCATGCCACTCGCTGTACTctgttgctttggataaaagcttctGCTAAGCTTGTGTTTGCCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233830 lncRNA downstream 32423 94098236 ~ 94100426 (-) False G206605
TU233831 lncRNA downstream 32917 94098236 ~ 94099932 (-) True G206605
TU233884 lncRNA downstream 44172 94088340 ~ 94088677 (-) True G206645
TU233769 lncRNA downstream 46958 93976774 ~ 94085891 (-) True G206564
TU233858 lncRNA downstream 93326 94039060 ~ 94039523 (-) True G206619
TU233920 lncRNA upstream 8632 94142744 ~ 94143233 (-) True G206672
TU233921 lncRNA upstream 9305 94143417 ~ 94143763 (-) True G206673
TU233922 lncRNA upstream 10344 94144456 ~ 94144779 (-) True G206674
TU233950 lncRNA upstream 50088 94184200 ~ 94186620 (-) True LOC110500043
TU233985 lncRNA upstream 139020 94273132 ~ 94273456 (-) True G206722
XM_036959367.1 mRNA downstream 46936 93934415 ~ 94085913 (-) False LOC110499999
XM_021577141.2 mRNA upstream 37769 94171881 ~ 94178540 (-) False LOC110500013
XM_021577139.2 mRNA upstream 37769 94171881 ~ 94180442 (-) True LOC110500013
XM_036959504.1 mRNA upstream 50087 94184199 ~ 94221104 (-) False LOC110500043
XM_036959507.1 mRNA upstream 50087 94184199 ~ 94221104 (-) False LOC110500043
XM_036959491.1 mRNA upstream 50087 94184199 ~ 94221105 (-) False LOC110500043
TU232213 other downstream 1169915 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 1693248 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 2344746 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 2541800 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 3691424 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 178312 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 178415 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 179278 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 193798 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 482803 94616915 ~ 94617232 (-) True G207244

Expression Profile