RNA id: TU233920


Basic Information

Item Value
RNA id TU233920
length 490
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G206672
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94142744 ~ 94143233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagaaagggtccagattgtctagcccggctgatttgtaggggtccagattttgcagctctttcagaacatcagctgaatggatttgggagaaggagaaatggggaaggcttgggcgagttgctgttgggggtgcagtgctgttgacaggggtaggagtagccaggtggaaagcatggccagccgtagaaaaatgcttattgaaattttcaattatggtggatttatcagtggtgacagtgtttcctatcttcagtgcagtgggcagctgggaggagatgttcttattctccatggactttacagtgtcccagaacttttttgagttagtgttgcaagaagcaaatttctgcttgaaaaagctagccttggcttttctaactgcctgtgtataatggtttctagcttccctgaacagctgcatatcacgggggctgttcgatgctaatgcagaacgccacaggatgtttttgtgttggttaagggcagtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233915 lncRNA downstream 8333 94133492 ~ 94134411 (-) True G206669
TU233917 lncRNA downstream 8632 94132849 ~ 94134112 (-) False G206669
TU233830 lncRNA downstream 42318 94098236 ~ 94100426 (-) False G206605
TU233831 lncRNA downstream 42812 94098236 ~ 94099932 (-) True G206605
TU233884 lncRNA downstream 54067 94088340 ~ 94088677 (-) True G206645
TU233921 lncRNA upstream 184 94143417 ~ 94143763 (-) True G206673
TU233922 lncRNA upstream 1223 94144456 ~ 94144779 (-) True G206674
TU233950 lncRNA upstream 40967 94184200 ~ 94186620 (-) True LOC110500043
TU233985 lncRNA upstream 129899 94273132 ~ 94273456 (-) True G206722
TU233988 lncRNA upstream 140894 94284127 ~ 94291287 (-) True G206725
XM_036959412.1 mRNA downstream 1456 94100948 ~ 94141288 (-) True LOC110500006
XM_036959407.1 mRNA downstream 1463 94100948 ~ 94141281 (-) False LOC110500006
XM_036959367.1 mRNA downstream 56831 93934415 ~ 94085913 (-) False LOC110499999
XM_021577141.2 mRNA upstream 28648 94171881 ~ 94178540 (-) False LOC110500013
XM_021577139.2 mRNA upstream 28648 94171881 ~ 94180442 (-) True LOC110500013
XM_036959504.1 mRNA upstream 40966 94184199 ~ 94221104 (-) False LOC110500043
XM_036959507.1 mRNA upstream 40966 94184199 ~ 94221104 (-) False LOC110500043
XM_036959491.1 mRNA upstream 40966 94184199 ~ 94221105 (-) False LOC110500043
TU232213 other downstream 1179810 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 1703143 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 2354641 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 2551695 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 3701319 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 169191 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 169294 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 170157 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 184677 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 473682 94616915 ~ 94617232 (-) True G207244

Expression Profile