RNA id: TU233590



Basic Information


Item Value
RNA id TU233590
length 733
lncRNA type intronic
GC content 0.44
exon number 2
gene id G206421
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94157424 ~ 94158198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATACACCGCCTACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCCTCTACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCCTCTACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCCTCTACTCTAAACCCCTTGGTTACCTGGGTGTAGGATACACCGCCGACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCCTCTACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCCTCTACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCGCCTACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCCTCTACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCGCGACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCGCCTACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCGCCGACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACTTCCGACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCCTCTACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCGTCGACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCCTCTACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCCTCTACTATAAACCCCTTGGTTACCTGGGTGTAGGATACACCCTCTACTATAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU233588 lncRNA upstream 12492 94144459 ~ 94144932 (+) True G206419
TU233587 lncRNA upstream 13603 94143584 ~ 94143821 (+) True G206418
TU233544 lncRNA upstream 57013 94098245 ~ 94100411 (+) True G206388
TU233531 lncRNA upstream 73225 94083754 ~ 94084199 (+) True G206377
TU233469 lncRNA upstream 167305 93989443 ~ 93990119 (+) True G206325
TU233595 lncRNA downstream 15862 94174060 ~ 94177373 (+) True G206426
TU233616 lncRNA downstream 72906 94231104 ~ 94231961 (+) True G206447
TU233650 lncRNA downstream 114925 94273123 ~ 94273412 (+) True G206474
TU233651 lncRNA downstream 119336 94277534 ~ 94277752 (+) True G206475
TU233647 lncRNA downstream 152549 94310747 ~ 94311155 (+) True G206471
XM_021577124.2 mRNA upstream 7957 94145663 ~ 94149467 (+) False LOC110500011
XM_036959470.1 mRNA upstream 7957 94145753 ~ 94149467 (+) True LOC110500011
XM_036934451.1 mRNA upstream 435662 93716089 ~ 93721762 (+) True LOC118936881
XM_036934440.1 mRNA upstream 533339 93623033 ~ 93624085 (+) True LOC118936880
XM_036959279.1 mRNA upstream 780519 93373307 ~ 93376905 (+) True LOC110502396
XM_036959574.1 mRNA downstream 105811 94264009 ~ 94268751 (+) True LOC110500081
XM_036959567.1 mRNA downstream 112362 94270560 ~ 94300044 (+) False zgc:136858
XM_036959569.1 mRNA downstream 119942 94278140 ~ 94300044 (+) False zgc:136858
XM_021577251.2 mRNA downstream 119943 94278141 ~ 94300044 (+) True zgc:136858
XM_036959535.1 mRNA downstream 141971 94300169 ~ 94317655 (+) False LOC110500101
TU233547 other upstream 55552 94100979 ~ 94101872 (+) False G206389
TU233702 other downstream 244393 94402591 ~ 94437682 (+) True LOC110500139
TU234120 other downstream 398971 94557169 ~ 94562224 (+) True G206850
TU234180 other downstream 473631 94631829 ~ 94632267 (+) True G206908
TU234200 other downstream 547748 94705946 ~ 94706248 (+) True G206926
TU235944 other downstream 2069595 96227793 ~ 96228463 (+) True G208404

Expression Profile