RNA id: TU233595


Basic Information

Item Value
RNA id TU233595
length 1488
lncRNA type antisense_over
GC content 0.44
exon number 4
gene id G206426
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94174060 ~ 94177373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGAGAGGTTTCCTTCGGTCAGCAagaatcttcttcttcttctctctctctgtctgcttcttGGCTCCTTTGCGGTTTTCACTCTTCTGCTGGATTCCTCCATACTGGTGGGTCATGTTGGTGAGAGCCTTCTTCTTCTTGATGTCATCATCCTGCTTCCTACGCTGATCCTCTGCCTCCTTCCTGTCCTTCTCCTCCGCAACCCTGgcctgcctctccttctccctctctgcacgAACCCTCTGCTGCTCTGCCCTCTCTGCGCGACGTTTctcAATCCTGTTGACGAGACTGATGagctcctcttcttccttcttccTCTGGATAAAGTGAGACTCGATCAAAGACTGGAGCTCAGACAGGTCCTTGTCCTGACGCTTCCTGTGGATGTCCTGACCACCACACAGAAGAATCAGATGAAGTAATAAGAATAGTTTGTTTTGGTAAGACAACATACATGTAATACACCCTGAAAAGAGTCATTTCCTTAGTTAGACGTCATCTTTGGACTTTCTGTACCTCTCATTTGCTTCATCTTAACAGGATACAGTTGGAGGCAAGTCTGTCACAAATGGTTAGTTAGTTTTATTATCATGATGTGTTTGTcagcggaggctgctgaggggaggactgctcataataatggagggaacggagcgaatggaatggcatcaaacacgcatttgatgtatttgataccattccactccagccattaccacgagcctgtcctccccatttaaggtgccaccaaccaccTGTGGTGTGTTTATGTGATTCAACTTACATCAAAATCCACTTTCTCGCCATCAGGCATCTTTGGTGCAGTGATATTTGGCACAAACCTATGGAAATGAAAATTGCGTAtctaatgtgtgtatatatatataatctcaaTTTGAGCATTTCAGTAAATGTCGTGATCTTTCAAGATCACTTATGATTTAACATATCATCTGTCAGGGGAAAATAAAAATAGGGCCACCCAGAAACACTTGGAGGAGTGTCCTCCAGGCAGAAATGACCAAGAATGGCCTCAACTGGTGTGACCTGGAAAAACTTGCCCTGTACCGAGTGAGATGGAGGATATTCGTCAACGGCCTATGATCCTTATAAGAGCCAAGGTCTTAAAGCAGGAATCCGTAGCGGTGACACGGCCACTTCTGTtttgcgatattacaacaacaaagaagctgccgatgtcggctcaatcggaaaacGACCTTAATATTTCTATTGTAGAATCTGTAACGTTTCAGCTTCATAGACTGTGATTCAGGCCTCTTTTCAGTCTATCTAACAACTTACTTTGGTTTGGGCTTGGCTCCATCTGTAATAAAGGACAGTGACTCTCTTAGTTTGACCATATCATACATAGAAGGATGTCATGTTAATCAGGATAGAATAGTCCTTTAAAGCTGTACGGGATGGGGTCATAAAAGTATTATTGTGTAATAAAATATACAGTTCATTGGCATATACACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233590 lncRNA upstream 15862 94157424 ~ 94158198 (+) True G206421
TU233588 lncRNA upstream 29128 94144459 ~ 94144932 (+) True G206419
TU233587 lncRNA upstream 30239 94143584 ~ 94143821 (+) True G206418
TU233544 lncRNA upstream 73649 94098245 ~ 94100411 (+) True G206388
TU233531 lncRNA upstream 89861 94083754 ~ 94084199 (+) True G206377
TU233616 lncRNA downstream 53731 94231104 ~ 94231961 (+) True G206447
TU233650 lncRNA downstream 95750 94273123 ~ 94273412 (+) True G206474
TU233651 lncRNA downstream 100161 94277534 ~ 94277752 (+) True G206475
TU233647 lncRNA downstream 133374 94310747 ~ 94311155 (+) True G206471
TU233657 lncRNA downstream 137260 94314633 ~ 94314872 (+) True G206479
XM_036959421.1 mRNA upstream 1264 94150431 ~ 94172796 (+) False dnm1l
XM_036959424.1 mRNA upstream 1264 94150431 ~ 94172796 (+) False dnm1l
XM_036959430.1 mRNA upstream 1264 94150432 ~ 94172796 (+) False dnm1l
XM_036959436.1 mRNA upstream 1264 94150433 ~ 94172796 (+) True dnm1l
XM_021577124.2 mRNA upstream 24593 94145663 ~ 94149467 (+) False LOC110500011
XM_036959574.1 mRNA downstream 86636 94264009 ~ 94268751 (+) True LOC110500081
XM_036959567.1 mRNA downstream 93187 94270560 ~ 94300044 (+) False zgc:136858
XM_036959569.1 mRNA downstream 100767 94278140 ~ 94300044 (+) False zgc:136858
XM_021577251.2 mRNA downstream 100768 94278141 ~ 94300044 (+) True zgc:136858
XM_036959535.1 mRNA downstream 122796 94300169 ~ 94317655 (+) False LOC110500101
TU233547 other upstream 72188 94100979 ~ 94101872 (+) False G206389
TU233702 other downstream 225218 94402591 ~ 94437682 (+) True LOC110500139
TU234120 other downstream 379796 94557169 ~ 94562224 (+) True G206850
TU234180 other downstream 454456 94631829 ~ 94632267 (+) True G206908
TU234200 other downstream 528573 94705946 ~ 94706248 (+) True G206926
TU235944 other downstream 2050420 96227793 ~ 96228463 (+) True G208404

Expression Profile