RNA id: TU234012


Basic Information

Item Value
RNA id TU234012
length 571
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G206748
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94321722 ~ 94322292 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacgctCCACtctgcagctagagagagagagagtacacgctccactctgcagagagagagagtacacgctccactctgcagagagagagagtacacgctccactctgcagagagagagaaagagagagagtagagatgtgGATCTTTGTGGATCTCTATCCACAAAGAaatcgaaaacaaatccaattttgataaactcccatatctactgggtgaaattccacagtgtgccatcacagcagcaagatttgtgacctgttgccacgagaaaagggcaaccagtgaagaacacacaccattgtaaatacaacccatatttatgcttatttattttatcttgtgtccttaaccatttgtacattgttaaaacactgtatatatatatatatatatatatatatatatatatataaaatatgacatttgtaatgtctttattgttttgaaacttctgtatgtgtaatatttactgttaatttttattgtttatttcactttatatattatctacctcacttgctttggcaatgttaacaaatgtttcccatgccaataaagcccttgaattga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234007 lncRNA downstream 4074 94315066 ~ 94317648 (-) True G206743
TU234009 lncRNA downstream 7137 94314340 ~ 94314585 (-) True G206745
TU234004 lncRNA downstream 9552 94311888 ~ 94312170 (-) True G206741
TU234001 lncRNA downstream 12530 94308970 ~ 94309192 (-) True G206738
TU234000 lncRNA downstream 13215 94308154 ~ 94308507 (-) True G206737
TU234015 lncRNA upstream 6809 94329101 ~ 94329351 (-) True G206751
TU234023 lncRNA upstream 15738 94338030 ~ 94338266 (-) True G206756
TU234020 lncRNA upstream 26447 94348739 ~ 94350164 (-) False LOC110500125
TU234018 lncRNA upstream 28718 94351010 ~ 94355227 (-) True LOC110500125
TU234028 lncRNA upstream 40218 94362510 ~ 94362759 (-) True G206761
XM_021577224.2 mRNA downstream 62889 94251418 ~ 94258833 (-) True LOC110500075
XM_021577199.2 mRNA downstream 78156 94232734 ~ 94243566 (-) True LOC110500060
XM_021577212.2 mRNA downstream 92177 94222366 ~ 94229545 (-) True LOC110500065
XM_036959490.1 mRNA downstream 100576 94188205 ~ 94221146 (-) False LOC110500043
XM_036959482.1 mRNA downstream 100615 94188205 ~ 94221107 (-) False LOC110500043
XM_021577304.2 mRNA upstream 26226 94348518 ~ 94359922 (-) False LOC110500125
XM_021577316.2 mRNA upstream 41723 94364015 ~ 94367194 (-) True LOC110500132
XM_021577348.2 mRNA upstream 89952 94412244 ~ 94416157 (-) False LOC110500153
XM_021577355.2 mRNA upstream 89952 94412244 ~ 94417008 (-) True LOC110500153
XM_021577457.2 mRNA upstream 204256 94526548 ~ 94529606 (-) False LOC110500221
TU234008 other downstream 7804 94313390 ~ 94313918 (-) True G206744
TU234006 other downstream 8948 94312424 ~ 94312774 (-) False G206742
TU234005 other downstream 8948 94312527 ~ 94312774 (-) True G206742
TU232213 other downstream 1358788 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 1882121 92398060 ~ 92439601 (-) False LOC110499897
TU234014 other upstream 5618 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 294623 94616915 ~ 94617232 (-) True G207244
TU234581 other upstream 307145 94629437 ~ 94629739 (-) True G207249
TU234691 other upstream 440370 94762662 ~ 94776356 (-) True G207340
TU235317 other upstream 1055431 95377723 ~ 95408714 (-) True G207858

Expression Profile