RNA id: TU234107



Basic Information


Item Value
RNA id TU234107
length 732
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G206839
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94498987 ~ 94499815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttcctaggccgtcattgaaaataagaattagttcttagcACATCCATTAGAGAACCAATTCAAGGCATGAGTTGGAAGGAACAAAATAGTTAAGTGTATATTTCACGGAAATAACATCACATGGACAGCAACCTTCATTTTACAACACAGATCGGCTCTTGTTGGAGACTACAGGGGCAGGCAATTCTTCATCACTGGAGAACGTGTCTACAGATGGTGGACATTTCTTGTTCTGAACGGTCAAATTTTTCAGGTACAACTGAACGTAGACGTCTTTCTTCTGTTCGGAGCTGGGAAGTGGGACATGGTTGGCCGTGAGCTCACTTTTGAGCTTATCCTTAGTGAGAACAGACGGATCTTCGAGGAATTCCGCCATGCCTGATTGCTTTCTTCTAGCTAAAAACTGTAGCTAGCAAGTAATGCTGAAATGTAGCAGTTAGCCAAACTCGGTcgctaacaacaacaacaacaacaaggaaaCGTGCAGAGCTAGCAATGTCGGCAAATGAAAAGACTGGAGCCCAGCGATTTAATTTAGCTAGCATGAACAAGCTATCCGGTTTAGTTACTTTTTTAAATCTTCAGATATATTCGATTATTTAGCAAAAATACAGATGCAATTTAattatatatttaaactcaacAAGTAAATACGGATTTAAAACTATTTAAAGAACTGTATGCCCTATTAGTTAAAGCCCGGCCTATTTGAGTCTGTCTGTCCGCAGTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU234102 lncRNA downstream 8291 94490408 ~ 94490696 (-) True G206834
TU234098 lncRNA downstream 12184 94486525 ~ 94486803 (-) True G206830
TU234095 lncRNA downstream 16295 94482394 ~ 94482692 (-) True G206827
TU234040 lncRNA downstream 113634 94385118 ~ 94385353 (-) True G206773
TU234028 lncRNA downstream 136228 94362510 ~ 94362759 (-) True G206761
TU234111 lncRNA upstream 2078 94501893 ~ 94504156 (-) True G206843
TU234518 lncRNA upstream 17761 94517576 ~ 94518231 (-) True G207192
TU234520 lncRNA upstream 22272 94522087 ~ 94522967 (-) True G207194
TU234531 lncRNA upstream 55709 94555524 ~ 94555822 (-) True G207205
TU234552 lncRNA upstream 81383 94581198 ~ 94581807 (-) True G207225
XM_021577355.2 mRNA downstream 81979 94412244 ~ 94417008 (-) True LOC110500153
XM_021577348.2 mRNA downstream 82830 94412244 ~ 94416157 (-) False LOC110500153
XM_021577316.2 mRNA downstream 131793 94364015 ~ 94367194 (-) True LOC110500132
XM_021577304.2 mRNA downstream 139065 94348518 ~ 94359922 (-) False LOC110500125
XM_021577224.2 mRNA downstream 240154 94251418 ~ 94258833 (-) True LOC110500075
XM_021577457.2 mRNA upstream 26733 94526548 ~ 94529606 (-) False LOC110500221
XM_021577466.2 mRNA upstream 26733 94526548 ~ 94529608 (-) True LOC110500221
XM_036959632.1 mRNA upstream 104229 94604044 ~ 94611301 (-) False asb13b
XM_021577491.2 mRNA upstream 104229 94604044 ~ 94611792 (-) True asb13b
XM_021577587.2 mRNA upstream 166113 94665928 ~ 94686791 (-) False LOC110500283
TU234014 other downstream 170804 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 185069 94313390 ~ 94313918 (-) True G206744
TU234006 other downstream 186213 94312424 ~ 94312774 (-) False G206742
TU234005 other downstream 186213 94312527 ~ 94312774 (-) True G206742
TU232213 other downstream 1536053 92962044 ~ 92962934 (-) True G205192
TU234576 other upstream 117100 94616915 ~ 94617232 (-) True G207244
TU234581 other upstream 129622 94629437 ~ 94629739 (-) True G207249
TU234691 other upstream 262847 94762662 ~ 94776356 (-) True G207340
TU235317 other upstream 877908 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 1024153 95523968 ~ 95524227 (-) True G207959

Expression Profile