RNA id: TU234111


Basic Information

Item Value
RNA id TU234111
length 2185
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G206843
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94501893 ~ 94504156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGATAGTATTTTAAATAAAAACAGATTCAAAATCCTTACCCCCACAATCCATCGTTGGGAAGCTAGCTGCCTGATCAAAGTAACaaacatttcagctttaataTACTGTATTCACTGTGTAACCACAAGTCAACAAAGAGGTTCAGTTTTAGGATagcattttttgtttgttttttaaaatttcacTTTCACCTAGACAAAAGAACAACATTAACAATAAAAAATGTCAACATCTTGACATCAAAATTCTATGAATGGTCAACATAAGTTAAGTTGCTATCAATTTGTTAAGTTGCTTACCATTTGTCTCTCCTCAGGCAATTGTTAGTGTTACCTCTTCTATGACAATGAAGTGTACATGAGGCAGAGTAAATATCAATTTATAATCCAAGTAACAAAATGGAATACATTGTTAACTCGTATATTTGCTCAACTACCTATTGCAAAAACGTTATTTTTCCCAGATCAGTAGTGTGCAGAACCGCTTAGAAGGGCAGTGTGGGTGCACTAAAAAAGACAGCCAGTCTTGGGTCATGTTCCTTAGGCAACAAACAGGGAAAACACACATTAAAACAGAGAGGATTATACCCATTTTGCTACagtgccctactgaacatgacccggTAGATGGGACTGGAAGATCTGGAATCTTTAGCACAACAAATCACTACTAAATGAAACATGTACGTAAACTCACACAAACTCACAAAGCTAATACTGGGATTTGGGTCACTGCTCCTCAAGTCAGGTGCCATCATGAGCCATTCACAGGTCAGACCACTTACTTAGTTACTGCAGCATATACCAAAAAACGAGCAATTTAACCAAAGAAAATCAGTTTTATAACCTTTATAGCTTGAAAATAAGGGTTTTTCCTCATACAGTGACGAGACCTGAAGTTACACTATTGGACACTGTCACTCCTCCCAGCACTGATCAGATTAATTTAGAGCAAATTAGAATAGACCTGAGCACCATTATTCTACCTAGCTTTATTGTTACTACTAGTGTATATTCAAAAACCAATACATTAATATCATTTCTCTGTGCTTGAATTAGTGGGAGGGCACTAAGCAGGGTTGAGGTAAATTCCATGTCAATTCCAGTcgattcaggaagtacactggaATTCCAATTCTCTTCCATGCTTTTTAATGAGGAACATTTGGAattgtttactttctgaattgactggaattgaaatggaattgacaccTACACTGGCACTAAGTGCTATCACTGTGCATGCACTTCACCATCAGAAAAACACCTGGCACCACAGACACTCCAAAAACGACAAACATGTCCTTCAAAAAACTACAACCATGCGTACGATTTGTCTGTCCTTtctaaaaatacacacacaaaggATACACAACATAAGACTTCACACTACGATTAAAAACAACGTCATAATAAAAACAAGTCTCTTTAGACTGTCTTGGCAAGACAGTGTTGGTTTTCCAGGAAGCTGGTGTTGGTTGGGTTGAATACCCCTCCTGCCCTCCTCACGTGGGGTGAGGAAAAGTGAACAAGGAGGGGACAGGATGATAGTCTACCAGCCCAGATTAAAAGTCAGTCCGTCCTCCAAGGTAGTGACCAGAGGATGACGATGGAGGGGGGTGTGGTGAGCTAGTGAGGTGTGGATGGCAGAGCAGTGGCCAGGTGGTCTGTTGAATAACCGGGGATCTGACCTCAATTGGacaacctggtaaaataacggtaaaataatacaacaaaaaaagaaagcaGGGTGGAGAGGGTGCACTGCTTACCGGCCGCCACTCTCTGCTTCTGCACCTTGGCTGCTGCCTCCCCCGATACCCAGCGGCACAATCACATTATCGAACACGGCATCCACCACCTTATCAACCGCGCTACACAGGTGACCCTTAGCGCTGTTTAGGAGACCCTTGGCGTCGGTCAGCATTCCCTTGAAGGACTGAACCTGATCTGCATCGAGGTGCTGAATGGCGAAGTAGATGGACCCAGCTACAGTGACGAGTACCATGAGCTTTAATAGTACAGAGAGGAAGCCGGGCCTGGCCGGCACGTTGGAGCCCAAGGAGCTGCATCCAGAATAAGACTCTGTATAGATGGAGTGCTCCAGGAGAGACTCGTTCAGCCAGTAGTTGCTGGGTTTCACCGGTCGGCCCGCCGCGCCGCGAATCGGTCGCCTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234107 lncRNA downstream 2078 94498987 ~ 94499815 (-) True G206839
TU234102 lncRNA downstream 11197 94490408 ~ 94490696 (-) True G206834
TU234098 lncRNA downstream 15090 94486525 ~ 94486803 (-) True G206830
TU234095 lncRNA downstream 19201 94482394 ~ 94482692 (-) True G206827
TU234040 lncRNA downstream 116540 94385118 ~ 94385353 (-) True G206773
TU234518 lncRNA upstream 13420 94517576 ~ 94518231 (-) True G207192
TU234520 lncRNA upstream 17931 94522087 ~ 94522967 (-) True G207194
TU234531 lncRNA upstream 51368 94555524 ~ 94555822 (-) True G207205
TU234552 lncRNA upstream 77042 94581198 ~ 94581807 (-) True G207225
TU234553 lncRNA upstream 77768 94581924 ~ 94582416 (-) True G207226
XM_021577355.2 mRNA downstream 84885 94412244 ~ 94417008 (-) True LOC110500153
XM_021577348.2 mRNA downstream 85736 94412244 ~ 94416157 (-) False LOC110500153
XM_021577316.2 mRNA downstream 134699 94364015 ~ 94367194 (-) True LOC110500132
XM_021577304.2 mRNA downstream 141971 94348518 ~ 94359922 (-) False LOC110500125
XM_021577224.2 mRNA downstream 243060 94251418 ~ 94258833 (-) True LOC110500075
XM_021577457.2 mRNA upstream 22392 94526548 ~ 94529606 (-) False LOC110500221
XM_021577466.2 mRNA upstream 22392 94526548 ~ 94529608 (-) True LOC110500221
XM_036959632.1 mRNA upstream 99888 94604044 ~ 94611301 (-) False asb13b
XM_021577491.2 mRNA upstream 99888 94604044 ~ 94611792 (-) True asb13b
XM_021577587.2 mRNA upstream 161772 94665928 ~ 94686791 (-) False LOC110500283
TU234014 other downstream 173710 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 187975 94313390 ~ 94313918 (-) True G206744
TU234006 other downstream 189119 94312424 ~ 94312774 (-) False G206742
TU234005 other downstream 189119 94312527 ~ 94312774 (-) True G206742
TU232213 other downstream 1538959 92962044 ~ 92962934 (-) True G205192
TU234576 other upstream 112759 94616915 ~ 94617232 (-) True G207244
TU234581 other upstream 125281 94629437 ~ 94629739 (-) True G207249
TU234691 other upstream 258506 94762662 ~ 94776356 (-) True G207340
TU235317 other upstream 873567 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 1019812 95523968 ~ 95524227 (-) True G207959

Expression Profile