RNA id: TU234128


Basic Information

Item Value
RNA id TU234128
length 465
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G206858
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94526572 ~ 94527078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACATTCCAATCTAGAACATATCTATCCATGTAGAAGAAAGGCATCTGTAACAGATTCCAGACTCCTCCAAAGAGATGTCCAGTCCAGTGATTGGTCCAGTCACGTgtcaatcatcatcatcagtcgATCAGGAACGGACAGTAACACAAAAAGGGCCCAATTCACCCATTGGGCTTCGAAATAAAGTAGTCCTTTAGTAACAATGTCCATCAATGGCAACCAGGTTACGAAGCCATTTCCTTATCGTCAAAATAAACTTTACGAAGCCAGTCGTATTCATACACCTGCCCAAAATAAGATTATATTTCTTTGAACGGAAAGAGGTTTTTGATTCACAGCTTTGACCTTTAACTTTAGTTGACCAATAGGGAACAAAGTCCCCATTACAAATAGAGTTAAGCGATGTAATACCCTCCAATCCAAAGGTTGTCACTGTTATACCATATTGTTGCTGTCGCTGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234112 lncRNA upstream 21933 94504437 ~ 94504639 (+) True G206844
TU233753 lncRNA upstream 36418 94488578 ~ 94490154 (+) True G206556
TU233751 lncRNA upstream 38240 94488131 ~ 94488332 (+) True G206555
TU233750 lncRNA upstream 44261 94482072 ~ 94482311 (+) True G206554
TU233749 lncRNA upstream 44603 94481759 ~ 94481969 (+) True G206553
TU234129 lncRNA downstream 358 94527436 ~ 94528029 (+) True G206859
TU234119 lncRNA downstream 12579 94539657 ~ 94556378 (+) True LOC110500196
TU234121 lncRNA downstream 35895 94562973 ~ 94563894 (+) True G206851
TU234168 lncRNA downstream 86035 94613113 ~ 94613397 (+) True G206896
TU234171 lncRNA downstream 89663 94616741 ~ 94617003 (+) True G206899
XM_036959594.1 mRNA upstream 6431 94514561 ~ 94520141 (+) False LOC110500186
XM_036959602.1 mRNA upstream 6431 94514674 ~ 94520141 (+) False LOC110500186
XM_021577399.2 mRNA upstream 6431 94514877 ~ 94520141 (+) False LOC110500186
XM_036959608.1 mRNA upstream 6431 94514877 ~ 94520141 (+) True LOC110500186
XM_036959614.1 mRNA upstream 12825 94505958 ~ 94513747 (+) True LOC110500174
XM_021577436.2 mRNA downstream 2563 94529641 ~ 94541962 (+) False LOC110500215
XM_021577446.2 mRNA downstream 2588 94529666 ~ 94541962 (+) False LOC110500215
XM_036959629.1 mRNA downstream 2588 94529666 ~ 94541962 (+) False LOC110500215
XM_036959628.1 mRNA downstream 2630 94529708 ~ 94541962 (+) True LOC110500215
XM_021577408.2 mRNA downstream 14889 94541967 ~ 94556385 (+) False LOC110500196
TU233702 other upstream 88890 94402591 ~ 94437682 (+) True LOC110500139
TU233549 other upstream 424700 94100979 ~ 94101872 (+) False G206389
TU234120 other downstream 30091 94557169 ~ 94562224 (+) True G206850
TU234180 other downstream 104751 94631829 ~ 94632267 (+) True G206908
TU234200 other downstream 178868 94705946 ~ 94706248 (+) True G206926
TU235944 other downstream 1700715 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 2085351 96612429 ~ 96613459 (+) True G208836

Expression Profile