RNA id: TU234171



Basic Information


Item Value
RNA id TU234171
length 263
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G206899
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94616741 ~ 94617003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctgtaccttttgcaaaatatcagtctgtccctgatgtttttcctggagagaagtggcttcttttctgcccttcttgacaccaggccatcctccaaaagtcttctcctcgctgtgcgtgcagatgcactcccacctgcctgctgccattcctgaccAAGCTCTGTAccggtggtgccccaatcccacagctgaatcaactttaggagacggtcctggcgcttgctggactttcttgggcgccctgaagccttcttcacaacaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU234168 lncRNA upstream 3344 94613113 ~ 94613397 (+) True G206896
TU234121 lncRNA upstream 52847 94562973 ~ 94563894 (+) True G206851
TU234119 lncRNA upstream 60363 94539657 ~ 94556378 (+) True LOC110500196
TU234129 lncRNA upstream 88712 94527436 ~ 94528029 (+) True G206859
TU234128 lncRNA upstream 89663 94526572 ~ 94527078 (+) True G206858
TU234174 lncRNA downstream 8154 94625157 ~ 94625377 (+) True G206902
TU234181 lncRNA downstream 15560 94632563 ~ 94632762 (+) True G206909
TU234182 lncRNA downstream 17193 94634196 ~ 94634546 (+) True G206910
TU234157 lncRNA downstream 21170 94638173 ~ 94643168 (+) True LOC110500246
TU234195 lncRNA downstream 85506 94702509 ~ 94702767 (+) True G206921
XM_036959631.1 mRNA upstream 14105 94588535 ~ 94602636 (+) True LOC110500230
XM_021577408.2 mRNA upstream 60356 94541967 ~ 94556385 (+) False LOC110500196
XM_021577415.2 mRNA upstream 60356 94541967 ~ 94556385 (+) False LOC110500196
XM_021577424.2 mRNA upstream 60356 94541967 ~ 94556385 (+) False LOC110500196
XM_036959628.1 mRNA upstream 74779 94529708 ~ 94541962 (+) True LOC110500215
XM_021577527.2 mRNA downstream 21128 94638131 ~ 94665869 (+) False LOC110500246
XM_021577502.2 mRNA downstream 21154 94638157 ~ 94665869 (+) False LOC110500246
XM_021577517.2 mRNA downstream 21154 94638157 ~ 94665869 (+) False LOC110500246
XM_021577546.2 mRNA downstream 21154 94638157 ~ 94665869 (+) False LOC110500246
XM_021577554.2 mRNA downstream 21154 94638157 ~ 94665869 (+) False LOC110500246
TU234120 other upstream 54517 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 179059 94402591 ~ 94437682 (+) True LOC110500139
TU233551 other upstream 514869 94100979 ~ 94101872 (+) False G206389
TU234180 other downstream 14826 94631829 ~ 94632267 (+) True G206908
TU234200 other downstream 88943 94705946 ~ 94706248 (+) True G206926
TU235944 other downstream 1610790 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 1995426 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 2869473 97486476 ~ 97486772 (+) True G209586

Expression Profile