RNA id: TU234180



Basic Information


Item Value
RNA id TU234180
length 439
RNA type TUCP
GC content 0.51
exon number 1
gene id G206908
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94631829 ~ 94632267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caacgtaaccaagactaaggagatgattgtggactacaggaaaaggaggaccgagcacgccctcattctcatcgacagggctgtagtggagcaggttgagagcttcaagttccttggtgtccacatcaccaacaaactagaatggtccaaacacatcaagacagtcgtgaagagggcacaacaaagcctattccccctcaggaaacaaaaaatatttggcatgggtcctgagatcctcaaaaggttctacagctgcaacattgagagcatcctgactggttgcatcactgcctggtacagcaattgctcagcctctgactgcaaggcactacaaagggtagtgcgtacggcccagtacatcactggggctaagctgcctgccatccaggacctctacaccaggcggtgtcagaggaaggccctaaaaatggtcaaagac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU234174 lncRNA upstream 6452 94625157 ~ 94625377 (+) True G206902
TU234171 lncRNA upstream 14826 94616741 ~ 94617003 (+) True G206899
TU234168 lncRNA upstream 18432 94613113 ~ 94613397 (+) True G206896
TU234121 lncRNA upstream 67935 94562973 ~ 94563894 (+) True G206851
TU234119 lncRNA upstream 75451 94539657 ~ 94556378 (+) True LOC110500196
TU234181 lncRNA downstream 296 94632563 ~ 94632762 (+) True G206909
TU234182 lncRNA downstream 1929 94634196 ~ 94634546 (+) True G206910
TU234157 lncRNA downstream 5906 94638173 ~ 94643168 (+) True LOC110500246
TU234195 lncRNA downstream 70242 94702509 ~ 94702767 (+) True G206921
TU234201 lncRNA downstream 74051 94706318 ~ 94706532 (+) True G206927
XM_036959631.1 mRNA upstream 29193 94588535 ~ 94602636 (+) True LOC110500230
XM_021577408.2 mRNA upstream 75444 94541967 ~ 94556385 (+) False LOC110500196
XM_021577415.2 mRNA upstream 75444 94541967 ~ 94556385 (+) False LOC110500196
XM_021577424.2 mRNA upstream 75444 94541967 ~ 94556385 (+) False LOC110500196
XM_036959629.1 mRNA upstream 89867 94529666 ~ 94541962 (+) False LOC110500215
XM_021577527.2 mRNA downstream 5864 94638131 ~ 94665869 (+) False LOC110500246
XM_021577502.2 mRNA downstream 5890 94638157 ~ 94665869 (+) False LOC110500246
XM_021577517.2 mRNA downstream 5890 94638157 ~ 94665869 (+) False LOC110500246
XM_021577546.2 mRNA downstream 5890 94638157 ~ 94665869 (+) False LOC110500246
XM_021577554.2 mRNA downstream 5890 94638157 ~ 94665869 (+) False LOC110500246
TU234120 other upstream 69605 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 194147 94402591 ~ 94437682 (+) True LOC110500139
TU233549 other upstream 529957 94100979 ~ 94101872 (+) False G206389
TU234200 other downstream 73679 94705946 ~ 94706248 (+) True G206926
TU235944 other downstream 1595526 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 1980162 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 2854209 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 2986350 97618617 ~ 97619089 (+) False G209591

Expression Profile