RNA id: TU234195



Basic Information


Item Value
RNA id TU234195
length 230
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G206921
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94702509 ~ 94702767 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gacgggttgggttaaatgtggaatagACATTTCAGTTgagtgcattcagttgtacaactgactaggtatccccctttccctatacaactgactaggtatctccctttccctatacaactgactaggtatcccccttccctatacaactgactaggtatctccctttccctatACAACGGACTTTCACTTTCTGCAATTTGAACTGTTAATTAAAGTCCAGTAGTTTTTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU234157 lncRNA upstream 59341 94638173 ~ 94643168 (+) True LOC110500246
TU234182 lncRNA upstream 67963 94634196 ~ 94634546 (+) True G206910
TU234181 lncRNA upstream 69747 94632563 ~ 94632762 (+) True G206909
TU234174 lncRNA upstream 77132 94625157 ~ 94625377 (+) True G206902
TU234171 lncRNA upstream 85506 94616741 ~ 94617003 (+) True G206899
TU234201 lncRNA downstream 3551 94706318 ~ 94706532 (+) True G206927
TU234210 lncRNA downstream 14081 94716848 ~ 94717065 (+) True G206931
TU234212 lncRNA downstream 16272 94719039 ~ 94719258 (+) True G206933
TU234215 lncRNA downstream 21251 94724018 ~ 94724231 (+) True G206936
TU234217 lncRNA downstream 24767 94727534 ~ 94727761 (+) True G206938
XM_021577568.2 mRNA upstream 794 94686845 ~ 94701715 (+) True LOC110500275
XM_021577527.2 mRNA upstream 36640 94638131 ~ 94665869 (+) False LOC110500246
XM_021577502.2 mRNA upstream 36640 94638157 ~ 94665869 (+) False LOC110500246
XM_021577517.2 mRNA upstream 36640 94638157 ~ 94665869 (+) False LOC110500246
XM_021577546.2 mRNA upstream 36640 94638157 ~ 94665869 (+) False LOC110500246
XR_005039097.1 mRNA downstream 5417 94708184 ~ 94710432 (+) True LOC118943818
XM_036959713.1 mRNA downstream 12386 94715153 ~ 94765103 (+) False LOC110500292
XM_036959657.1 mRNA downstream 12388 94715155 ~ 94770734 (+) False LOC110500292
XM_036959671.1 mRNA downstream 12388 94715155 ~ 94770734 (+) False LOC110500292
XM_036959679.1 mRNA downstream 12388 94715155 ~ 94770734 (+) False LOC110500292
TU234180 other upstream 70242 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 140285 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 264827 94402591 ~ 94437682 (+) True LOC110500139
TU233552 other upstream 600637 94100979 ~ 94101872 (+) False G206389
TU234200 other downstream 3179 94705946 ~ 94706248 (+) True G206926
TU235944 other downstream 1525026 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 1909662 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 2783709 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 2915850 97618617 ~ 97619089 (+) False G209591

Expression Profile