RNA id: TU234239


Basic Information

Item Value
RNA id TU234239
length 225
lncRNA type intronic
GC content 0.41
exon number 2
gene id G206960
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94796315 ~ 94796559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatatagcaattaaacactggaatggtagaggagcaaggtaaataaataaataaagtatggggatgaggtagatagatgggctgtttacagatgggctatgtacaggtacagtgatctgtaagctgctctgacagctggtgcttaaagctagtgagggagatgtgagtctccagcttcagcttCTTTGGGAATTAGAATCCGTAATATACGGGAATGTCAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234228 lncRNA upstream 38646 94757358 ~ 94757669 (+) True G206949
TU234223 lncRNA upstream 56794 94739311 ~ 94739521 (+) True G206944
TU234221 lncRNA upstream 61157 94734956 ~ 94735158 (+) True G206942
TU234218 lncRNA upstream 67624 94728467 ~ 94728691 (+) True G206939
TU234217 lncRNA upstream 68554 94727534 ~ 94727761 (+) True G206938
TU234284 lncRNA downstream 87605 94884164 ~ 94903947 (+) True G207002
TU234320 lncRNA downstream 138264 94934823 ~ 94935153 (+) True G207035
TU234288 lncRNA downstream 153900 94950459 ~ 94959350 (+) True LOC110500336
TU234290 lncRNA downstream 166559 94963118 ~ 94964143 (+) True G207006
TU234334 lncRNA downstream 217368 95013927 ~ 95015281 (+) True G207048
XM_036959657.1 mRNA upstream 25581 94715155 ~ 94770734 (+) False LOC110500292
XM_036959671.1 mRNA upstream 25581 94715155 ~ 94770734 (+) False LOC110500292
XM_036959679.1 mRNA upstream 25581 94715155 ~ 94770734 (+) False LOC110500292
XM_036959684.1 mRNA upstream 25581 94715155 ~ 94770734 (+) False LOC110500292
XM_036959667.1 mRNA upstream 25581 94715156 ~ 94770734 (+) False LOC110500292
XM_036959770.1 mRNA downstream 18217 94814776 ~ 94872439 (+) True LOC110500328
XM_036959829.1 mRNA downstream 93779 94890338 ~ 94950324 (+) False LOC110500336
XM_036959818.1 mRNA downstream 93779 94890338 ~ 94955068 (+) False LOC110500336
XM_036959786.1 mRNA downstream 93781 94890340 ~ 94956288 (+) False LOC110500336
XM_036959799.1 mRNA downstream 93781 94890340 ~ 94956288 (+) False LOC110500336
TU234200 other upstream 90067 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 164048 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 234091 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 358633 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 694443 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 1431234 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 1815870 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 2689917 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 2822058 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 2901552 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile