RNA id: TU234711



Basic Information


Item Value
RNA id TU234711
length 472
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G207358
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94812480 ~ 94812983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGATGTTGAGGCTGACATTGAAAACAGTAGAAAATCTACAGCAGCTCATGCGGACAACACTGATGAATGCCTCAGCCCTTTTGATTGACAACCTGAGACACTCTTCTACCTCGAAGAAACAAGATGATAGACTGAACAAGATGATAGACTGAACAAGATGATAGACGGATATGTCAGGTTAATGAAATCAAATCATAATACTCTGCTGTTGTGTGATAAATTTTTAAAAAACAATGTATAAAACAATGATGCTCTAAATTTAGTGTCTAATGCCGTAATTCAATCTGAACCATATTTAGGTTTTGCTATTTGTCAGTAACCTAATAATGCCTTACAGCTAGTGAATTGAAcacaataaaacaaaataataataataataataataataattgcccTACGCAATTTCTGACTGTCTATATCACATTGTTTTGTAGTTCCAACTACATTTCATAATGCTAAACCCATCCCCACG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU234690 lncRNA downstream 48206 94762662 ~ 94764274 (-) False G207340
TU234689 lncRNA downstream 48667 94762662 ~ 94763813 (-) False G207340
TU234685 lncRNA downstream 53970 94758211 ~ 94758510 (-) True G207336
TU234686 lncRNA downstream 56550 94753434 ~ 94755930 (-) True G207337
TU234676 lncRNA downstream 75752 94736522 ~ 94736728 (-) True G207328
TU234726 lncRNA upstream 10453 94823436 ~ 94824226 (-) True G207373
TU234751 lncRNA upstream 41665 94854648 ~ 94855369 (-) True G207392
TU234626 lncRNA upstream 50547 94863530 ~ 94866355 (-) True G207287
TU234786 lncRNA upstream 107092 94920075 ~ 94921025 (-) False G207421
TU234788 lncRNA upstream 107092 94920075 ~ 94921025 (-) False G207421
XR_005039105.1 mRNA downstream 31112 94777558 ~ 94781368 (-) True LOC110500320
XR_005039107.1 mRNA downstream 31114 94777558 ~ 94781366 (-) False LOC110500320
XR_005039104.1 mRNA downstream 31118 94777558 ~ 94781362 (-) False LOC110500320
XR_005039106.1 mRNA downstream 31119 94777558 ~ 94781361 (-) False LOC110500320
XM_021577580.2 mRNA downstream 125659 94665928 ~ 94686821 (-) True LOC110500283
XM_036959851.1 mRNA upstream 146935 94959918 ~ 94968140 (-) False LOC110500345
XM_036959842.1 mRNA upstream 146960 94959943 ~ 94974913 (-) True LOC110500345
trnay-gua mRNA upstream 196619 95009602 ~ 95009691 (-) True trnay-gua
XM_021577703.2 mRNA upstream 202692 95015675 ~ 95020429 (-) True LOC110500368
XM_036959906.1 mRNA upstream 284396 95097379 ~ 95124547 (-) True LOC110502417
TU234691 other downstream 36124 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 182741 94629437 ~ 94629739 (-) True G207249
TU234576 other downstream 195248 94616915 ~ 94617232 (-) True G207244
TU234014 other downstream 484297 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 498562 94313390 ~ 94313918 (-) True G206744
TU235317 other upstream 564740 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 710985 95523968 ~ 95524227 (-) True G207959
TU235358 other upstream 791245 95604228 ~ 95609786 (-) True G207884
TU235350 other upstream 869054 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 869640 95682623 ~ 95686864 (-) True G207876

Expression Profile