RNA id: TU234751



Basic Information


Item Value
RNA id TU234751
length 322
lncRNA type intronic
GC content 0.43
exon number 2
gene id G207392
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94854648 ~ 94855369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGTgaggattatatattttttaatccattttagaataaggctgtaacataacataatgtggaaagagtcaaggggtctgagtactttctgaaggaactgtatagACCAAATACTGACTTTTTGGTGGTCTATAGAAACTTCTTACGAGAATCAGCTTTAGATGAGACAGATGAACctggctttaggtgaggcagaggaacctggctttaggtgaggcagaggaacctggctttaggtgaggcagatgaacctggctttaggtgaggcagatgaacctggctttacgtgaggcagatgaacctggctttaggtgaggcagat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU234726 lncRNA downstream 30422 94823436 ~ 94824226 (-) True G207373
TU234711 lncRNA downstream 41665 94812480 ~ 94812983 (-) True G207358
TU234690 lncRNA downstream 90374 94762662 ~ 94764274 (-) False G207340
TU234689 lncRNA downstream 90835 94762662 ~ 94763813 (-) False G207340
TU234685 lncRNA downstream 96138 94758211 ~ 94758510 (-) True G207336
TU234626 lncRNA upstream 8161 94863530 ~ 94866355 (-) True G207287
TU234786 lncRNA upstream 64706 94920075 ~ 94921025 (-) False G207421
TU234788 lncRNA upstream 64706 94920075 ~ 94921025 (-) False G207421
TU234789 lncRNA upstream 64706 94920075 ~ 94921025 (-) True G207421
TU234827 lncRNA upstream 152611 95007980 ~ 95008186 (-) True G207454
XR_005039105.1 mRNA downstream 73280 94777558 ~ 94781368 (-) True LOC110500320
XR_005039107.1 mRNA downstream 73282 94777558 ~ 94781366 (-) False LOC110500320
XR_005039104.1 mRNA downstream 73286 94777558 ~ 94781362 (-) False LOC110500320
XR_005039106.1 mRNA downstream 73287 94777558 ~ 94781361 (-) False LOC110500320
XM_021577580.2 mRNA downstream 167827 94665928 ~ 94686821 (-) True LOC110500283
XM_036959851.1 mRNA upstream 104549 94959918 ~ 94968140 (-) False LOC110500345
XM_036959842.1 mRNA upstream 104574 94959943 ~ 94974913 (-) True LOC110500345
trnay-gua mRNA upstream 154233 95009602 ~ 95009691 (-) True trnay-gua
XM_021577703.2 mRNA upstream 160306 95015675 ~ 95020429 (-) True LOC110500368
XM_036959906.1 mRNA upstream 242010 95097379 ~ 95124547 (-) True LOC110502417
TU234691 other downstream 78292 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 224909 94629437 ~ 94629739 (-) True G207249
TU234576 other downstream 237416 94616915 ~ 94617232 (-) True G207244
TU234014 other downstream 526465 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 540730 94313390 ~ 94313918 (-) True G206744
TU235317 other upstream 522354 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 668599 95523968 ~ 95524227 (-) True G207959
TU235358 other upstream 748859 95604228 ~ 95609786 (-) True G207884
TU235350 other upstream 826668 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 827254 95682623 ~ 95686864 (-) True G207876

Expression Profile