RNA id: TU234786



Basic Information


Item Value
RNA id TU234786
length 786
lncRNA type antisense_over
GC content 0.55
exon number 3
gene id G207421
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94920075 ~ 94921025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctcACCGCTGTCCTTGATGCCGTTCTCCTCTATAGTCTTCTGTTCAGCCAGTTCAGACAGAGACTCATCGATGGTCTGACTCCCTCTCAGAGTCTGGGACAGCCTCCTCCTAAACCGCTTCATCTTCTCCATGGTGCTCTTTGGCAGGGGAGGTCtggggagagaaggggacagtCAGTAAGgtctggggagaggaggggacagtcaGTAAggtctggggagaggaggggacagtcaGTAAGgtctggggagaggaggggagagtcaGTATGgtctggggagaggaggggagagtcaGTAAGGTCTGGGGAGAGTCAGTAAGGTCTGGGGAGAGTCAGTAAGGTCTGGGGAGAGTCAGTAAGGTCTGGGGAGAGTCAGTAAGGTCTGGGGAGAGTCAGTAAGGTCTGGGGAGAGTCAGTAAGGTCTGGGGAGAGTCAGTAAcgtctggggagaggagaggaggggacagtcaGTAAggtctggggagaggagaggaggggacagtcaGTAAGGtctagggagaggagaggaggggacagtcaGTAAggtctggggagaggagaggaggggacagtcaGTAAggtctggggagaggagaggaggggacagtcaGTAAggtctggggagaggagaggaggggacagtcaGTAAGgtctggggagaggagaggaggggacagtcaGTAAGGTCTGGGGAGAGTCAGTAAGGTCTGGGTATTAGtaaggatattttgtcaggaaaatatgctagaatatgcatataattgacagctttggatagaaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU234626 lncRNA downstream 53720 94863530 ~ 94866355 (-) True G207287
TU234751 lncRNA downstream 64706 94854648 ~ 94855369 (-) True G207392
TU234726 lncRNA downstream 95849 94823436 ~ 94824226 (-) True G207373
TU234711 lncRNA downstream 107092 94812480 ~ 94812983 (-) True G207358
TU234690 lncRNA downstream 155801 94762662 ~ 94764274 (-) False G207340
TU234827 lncRNA upstream 86955 95007980 ~ 95008186 (-) True G207454
TU234622 lncRNA upstream 92911 95013936 ~ 95015257 (-) True G207283
TU234835 lncRNA upstream 99466 95020491 ~ 95020717 (-) True G207462
TU234844 lncRNA upstream 128859 95049884 ~ 95050507 (-) True G207471
TU234860 lncRNA upstream 160017 95081042 ~ 95081243 (-) True G207487
XR_005039105.1 mRNA downstream 138707 94777558 ~ 94781368 (-) True LOC110500320
XR_005039107.1 mRNA downstream 138709 94777558 ~ 94781366 (-) False LOC110500320
XR_005039104.1 mRNA downstream 138713 94777558 ~ 94781362 (-) False LOC110500320
XR_005039106.1 mRNA downstream 138714 94777558 ~ 94781361 (-) False LOC110500320
XM_021577580.2 mRNA downstream 233254 94665928 ~ 94686821 (-) True LOC110500283
XM_036959851.1 mRNA upstream 38893 94959918 ~ 94968140 (-) False LOC110500345
XM_036959842.1 mRNA upstream 38918 94959943 ~ 94974913 (-) True LOC110500345
trnay-gua mRNA upstream 88577 95009602 ~ 95009691 (-) True trnay-gua
XM_021577703.2 mRNA upstream 94650 95015675 ~ 95020429 (-) True LOC110500368
XM_036959906.1 mRNA upstream 176354 95097379 ~ 95124547 (-) True LOC110502417
TU234691 other downstream 143719 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 290336 94629437 ~ 94629739 (-) True G207249
TU234576 other downstream 302843 94616915 ~ 94617232 (-) True G207244
TU234014 other downstream 591892 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 606157 94313390 ~ 94313918 (-) True G206744
TU235317 other upstream 456698 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 602943 95523968 ~ 95524227 (-) True G207959
TU235358 other upstream 683203 95604228 ~ 95609786 (-) True G207884
TU235350 other upstream 761012 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 761598 95682623 ~ 95686864 (-) True G207876

Expression Profile