RNA id: TU234844


Basic Information

Item Value
RNA id TU234844
length 624
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G207471
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95049884 ~ 95050507 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttaatcttttatttttattggccagtctgagatatggctttttatttgcaactctgcctagaaggtcagcatcccggagtcgcctcttcactgttgacgttgagactggtgttttgcggtgtTTCTCAAactacgagatcttcagtttcttggaaatttctcgcatggaatagccttcatttctcagaacaggaatagactgacgagtttcagaagaaagtgatttgtttctggccattttgagcctgtaatcgaacccacatgctgatgctccagatactcaactagtctaaagaaggccagttttattgcttctttaatcagaacaacagttttcagctgtgcttacagaattgcaaaagggttttctaatgatcaattagccttttaaaatgattagctaacacaacatgccattggaacacaggagtgatggttgctgataatgggcctctgtatgcctatgtagatattccattaaaaatcagccgtttccagctacaatagtcatttacaacattaacaatgtctacactgtatttctgattaatttgatgttattttaatggacaaaaaatgtgtttttctttcaaaaacaaggacatttctaagtgacctcaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234835 lncRNA downstream 29167 95020491 ~ 95020717 (-) True G207462
TU234622 lncRNA downstream 34627 95013936 ~ 95015257 (-) True G207283
TU234827 lncRNA downstream 41698 95007980 ~ 95008186 (-) True G207454
TU234786 lncRNA downstream 128859 94920075 ~ 94921025 (-) False G207421
TU234860 lncRNA upstream 30535 95081042 ~ 95081243 (-) True G207487
TU234863 lncRNA upstream 35381 95085888 ~ 95086181 (-) True G207490
TU234617 lncRNA upstream 44716 95095223 ~ 95095886 (-) True G207278
TU234872 lncRNA upstream 62258 95112765 ~ 95113514 (-) True G207499
TU234876 lncRNA upstream 68748 95119255 ~ 95120034 (-) True G207503
XM_021577703.2 mRNA downstream 29455 95015675 ~ 95020429 (-) True LOC110500368
trnay-gua mRNA downstream 40193 95009602 ~ 95009691 (-) True trnay-gua
XM_036959842.1 mRNA downstream 74971 94959943 ~ 94974913 (-) True LOC110500345
XM_036959851.1 mRNA downstream 81744 94959918 ~ 94968140 (-) False LOC110500345
XR_005039105.1 mRNA downstream 268516 94777558 ~ 94781368 (-) True LOC110500320
XM_036959906.1 mRNA upstream 46872 95097379 ~ 95124547 (-) True LOC110502417
LOC118944198 mRNA upstream 220586 95271093 ~ 95271272 (-) True LOC118944198
XM_021580524.2 mRNA upstream 577942 95628449 ~ 95631972 (-) False parietopsin
XM_036960040.1 mRNA upstream 585389 95635896 ~ 95664503 (-) True LOC110502485
XM_021577854.2 mRNA upstream 652852 95703359 ~ 95721115 (-) True LOC110500466
TU234691 other downstream 273528 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 420145 94629437 ~ 94629739 (-) True G207249
TU234576 other downstream 432652 94616915 ~ 94617232 (-) True G207244
TU234014 other downstream 721701 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 735966 94313390 ~ 94313918 (-) True G206744
TU235317 other upstream 327216 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 473461 95523968 ~ 95524227 (-) True G207959
TU235358 other upstream 553721 95604228 ~ 95609786 (-) True G207884
TU235350 other upstream 631530 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 632116 95682623 ~ 95686864 (-) True G207876

Expression Profile