RNA id: TU234416


Basic Information

Item Value
RNA id TU234416
length 357
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G207115
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95142348 ~ 95142704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCAATGATATTCTGTACAGAGGAGTATAAATAAGTTGTGATGCTCAACTGCTGTATGACTCTTTCAACATGCCACTGAAAAGGTAGAACGCTACAATTCATATTATGATACCTGACAACACGGCAGACTAATTAAAACCCATTTGCATACATGCAAACAGCAAGTTGGATGCTTAGCAAAAACAACTTTGAAACTCTTTGTCCATCTGAGGGGAGTTGTTCTTGTTTCAAACTTTACCATCTTTAAATGGCTTAGTTTACTCCCAATACGAACTGACATGATTTTCCACTTAGCTTTTCTGTAGTTGATTCAAGACGGCAGTTTTGTTTTATAACGTTTAGTTTCCTTTCAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234395 lncRNA upstream 33529 95108199 ~ 95108819 (+) True G207106
TU234390 lncRNA upstream 40969 95101098 ~ 95101379 (+) True G207103
TU234159 lncRNA upstream 46473 95095223 ~ 95095875 (+) True G206887
TU234388 lncRNA upstream 47523 95094391 ~ 95094825 (+) True G207101
TU234386 lncRNA upstream 56242 95085838 ~ 95086106 (+) True G207099
TU234433 lncRNA downstream 11989 95154693 ~ 95155284 (+) False G207128
TU234437 lncRNA downstream 11989 95154693 ~ 95155284 (+) False G207128
TU234434 lncRNA downstream 13861 95156565 ~ 95157417 (+) True G207128
TU234460 lncRNA downstream 61310 95204014 ~ 95204824 (+) True G207146
TU234487 lncRNA downstream 104936 95247640 ~ 95248106 (+) True G207165
XM_036959898.1 mRNA upstream 1393 95124498 ~ 95140955 (+) True LOC110502428
XM_036959892.1 mRNA upstream 50042 95058364 ~ 95092306 (+) True LOC110502411
XR_005039112.1 mRNA upstream 117903 95020413 ~ 95024445 (+) True LOC118943829
XM_021577687.2 mRNA upstream 128544 95007278 ~ 95013804 (+) True LOC110500357
XM_021577677.2 mRNA upstream 137190 94978217 ~ 95005158 (+) True hal
XM_036959911.1 mRNA downstream 6212 95148916 ~ 95177761 (+) True LOC110502438
XM_021577771.2 mRNA downstream 42192 95184896 ~ 95214670 (+) False LOC110500385
XM_036959959.1 mRNA downstream 42192 95184896 ~ 95214670 (+) False LOC110500385
XM_021577728.2 mRNA downstream 42193 95184897 ~ 95214670 (+) False LOC110500385
XR_005039137.1 mRNA downstream 42193 95184897 ~ 95214670 (+) False LOC110500385
TU234200 other upstream 436100 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 510081 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 580124 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 704666 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 1040476 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 1085089 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 1469725 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 2343772 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 2475913 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 2555407 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile