RNA id: TU234911


Basic Information

Item Value
RNA id TU234911
length 1099
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G207533
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95173288 ~ 95174426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggaaataagcttTTTCCTTGATGATTTTCTTCAATTGTATTTGGAGGCGTCACCGGCTGGAGCTCCCTTATGTATGTATTAAAACATATAGAAAAGATCTAATATATTCAATGAATCAGCGTCATATGATTGGCGTTCAAATCCTTCTGTACTCTACCTTTGGGCAGTTTGGCTGTCGTCTGCCTTGAAAATGTAATGCAGCGTGTTTTTGTGATAGAGCTTGAACTGTTGCTTCTGAACTGGCGGTCCTgccccttcttcctcctctttcaacATGAAGCCCAGCAATGGCTGGCTCTCTAACGCTGCCACGTCCTATGACagacacgagagagagacaggagagagagagagagagagagacaggagagagacaggggagagagagagagaggagagagagagagacaggagagagagagagagagagagagagagggagagagagacggaagttGGATTTTGGTGAATTAAACTCAAACACAGTTGTCTTTTTCatatttaaaaaaaaacctaTAGCAGAACAGAACTGAAATACTGTCTCAAAATATAGAATAGCAGAGGCATGAGTGTTATGTGAGTAACAGGTGTAGAAAACATGGAGAAAGTCTTTGTCACAACATCTTGATCAGATGTATTTACAATACATTCTACGGCAGCACCTACCTCACTGGCAGCGTACGTATacaggactttgttcttgatgaCGAACCAAAGCCTCTTCCCCTGCTTCTTATTGCCCTTTGACCTCTGCAGGTAACCACTCATAGACGAGTTGTCTGTGTTCGCTGACACCTGAAAACACCAAAGATCATTGGATAACGTCACTGACTAATCATCAGTAACACATTGGTCGTGTTCAAATGGGCACCGAATGAATGAAAACAGTCTGAACCGGGGAGATATCTGAACGTGAAATGCTCATTTTCCATTATGAAACATTTTCCTACGATGCCCCTAACGAACGACTCTGATTGAACTTTAGAGTGGTAGACGAGTCACCTCCTTGAGGGCAGCAGGGATCTTCTTCGTTTTCCTGGCGAAAGCAAAGGAGGATTTTCCACCAGGGGAGAGAGTGGCAGACAGGTCCTTTTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234892 lncRNA downstream 25412 95147490 ~ 95147876 (-) True G207519
TU234890 lncRNA downstream 30473 95141941 ~ 95142815 (-) True G207517
TU234876 lncRNA downstream 53254 95119255 ~ 95120034 (-) True G207503
TU234872 lncRNA downstream 59774 95112765 ~ 95113514 (-) True G207499
TU234617 lncRNA downstream 77402 95095223 ~ 95095886 (-) True G207278
TU234953 lncRNA upstream 66097 95240523 ~ 95240886 (-) True G207575
TU234974 lncRNA upstream 84712 95259138 ~ 95260564 (-) False G207589
TU234976 lncRNA upstream 84712 95259138 ~ 95261093 (-) False G207589
TU234977 lncRNA upstream 84712 95259138 ~ 95261028 (-) True G207589
TU234981 lncRNA upstream 93096 95267522 ~ 95267990 (-) True G207592
XM_036959906.1 mRNA downstream 48741 95097379 ~ 95124547 (-) True LOC110502417
XM_021577703.2 mRNA downstream 152859 95015675 ~ 95020429 (-) True LOC110500368
trnay-gua mRNA downstream 163597 95009602 ~ 95009691 (-) True trnay-gua
XM_036959842.1 mRNA downstream 198375 94959943 ~ 94974913 (-) True LOC110500345
XM_036959851.1 mRNA downstream 205148 94959918 ~ 94968140 (-) False LOC110500345
LOC118944198 mRNA upstream 96667 95271093 ~ 95271272 (-) True LOC118944198
XM_021580524.2 mRNA upstream 454023 95628449 ~ 95631972 (-) False parietopsin
XM_036960040.1 mRNA upstream 461470 95635896 ~ 95664503 (-) True LOC110502485
XM_021577854.2 mRNA upstream 528933 95703359 ~ 95721115 (-) True LOC110500466
XR_002475062.2 mRNA upstream 707705 95882131 ~ 95883679 (-) True LOC110533932
TU234691 other downstream 396932 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 543549 94629437 ~ 94629739 (-) True G207249
TU234576 other downstream 556056 94616915 ~ 94617232 (-) True G207244
TU234014 other downstream 845105 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 859370 94313390 ~ 94313918 (-) True G206744
TU235317 other upstream 203297 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 349542 95523968 ~ 95524227 (-) True G207959
TU235358 other upstream 429802 95604228 ~ 95609786 (-) True G207884
TU235350 other upstream 507611 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 508197 95682623 ~ 95686864 (-) True G207876

Expression Profile