RNA id: TU234977


Basic Information

Item Value
RNA id TU234977
length 1817
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G207589
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95259138 ~ 95261093 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaacatgtttgtttttattaagttgaacatgtgctctttatgacagaatgtaaaCATTTGTTGAAATCAAAgttttttagtttagttttttaACCAAATGACACTTCTCAGAAGTCACTGAATCGGTGGAACGACCCAACTATCACAAGATGGTAAAATAACCCTGATatcacagtgttgtagactgTCCACTCTTCTCAGCTATTCAAATGATTTATTACTACTGGAATTCCGGTAAAAGCGCATGAATAAAATCCCGTGAGATATTTGAGTTTTGTAAGAGACTGAAGAAGTGACACCGTTCACGTCTTTATATTGTCTTGATGTTTATGGAGCGATAACCTGGTGGGAATACAAACTGATAACCTCATCGGATTGATTTTGTCTCAGGCAGAAGTCTTATCACAAAACCTCAgtggcccccccacccccctcaccccaccccacccccagaCAGCACCTCCTCACTTCTCTATAAATTATTTtctaaataaaaacaacaacaaagtcataaaaaaaacatgtatcaaacaacatattgcacttttaaaaTGTATCCAATAAAAGAAGTAAACAAACCAAGTCAGTTTTAAAAGATGACAAACGTGTGACTGCAGGCAATAAGGAAGTCTGTCTGTAAGACCTGAAACAGAGTCCACagggtacatcccaaatggcatcctcgctatatagtgcactacaggccccatagggctctggtctaaagtagtgcactacaggccccatagggctctggtctaaagtagtgaactataaagggaatagggtgccttatGGGACACAACCATTAAAAACAATAAAGCaagatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtccatgaAGACCGATGAACATCTCCGACCATGAGACGACAGTGAGGCAACAGAACTGTGCAGGCTTGATGATTATGTTCCGTGACCAATCCACCAATCCCATCAGAGACAAGGGAGATTGAGATCCTATTGTATAATGAACAGTAAGTCAGTAACCAATCCCCTTGTCTAAAACCATCAGGCTCGATCCCACCTCTTCTGATCTTCATCACTTACAAATACACCATTCTGATGGAGTTCTGACTGAGCCCGGAGATCATTTGTTGCAGTGTGACGCTGTGGACTGCATCATCCTCTTCTGACCAATGGAAATCTTAGGAGTGAACAGGAAGTAGACTCTCGTGATATGACTTAACATTGGGAGAACCAGCATTAATCAAGGATTACAACATTCTCGGCCTTCTCATTCGTGTTATGATGTCTGTTCTTGCACCTCACATTGACTTGATATTCAGTGTTATTCTGGCTGGTGAGATTAACCAGTCAGTGACCATGTTTTCACAGACCCATTCTCCCCTACCAGACAGCACCAGGACCAACGCTATACTGAAGAACCTCCCCACTGTAGGTTCTAATCACTTATAAATATACTATTTTGATGTTCTGCGCTCTGAGATCCGCCCGGAGATAATTTGTTGCTGTGTGTGGTTGTGGACAGCATTAGGCTGACACCAGGACACTCTCCACAGCACGCTGAAAATTCTCCCAATTCCTCCAGAATAGCGCCAGCAGACACATGCCCAGGAAGGTGCCCATCACGTGGCGTCGGCTCCTCAGGAGGGGTGCGGCGAACTTGGCGGCCGTGGAGACGCACACGAGGATCACGGTGACGAGGGCGAGCATGATGTTGATGCTCTTACCCAGAAGCACCCTGGCGTCACTGGACTCGAGCTGTAcagtttgttgttgctgctgctggagCTCTAGTTTAGAGACCCGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234953 lncRNA downstream 18252 95240523 ~ 95240886 (-) True G207575
TU234898 lncRNA downstream 58484 95154198 ~ 95200654 (-) True G207524
TU234911 lncRNA downstream 84712 95173288 ~ 95174426 (-) True G207533
TU234892 lncRNA downstream 111262 95147490 ~ 95147876 (-) True G207519
TU234890 lncRNA downstream 116323 95141941 ~ 95142815 (-) True G207517
TU234981 lncRNA upstream 6494 95267522 ~ 95267990 (-) True G207592
TU234982 lncRNA upstream 7278 95268306 ~ 95279187 (-) True G207593
TU235289 lncRNA upstream 35546 95296574 ~ 95296959 (-) True G207836
TU235337 lncRNA upstream 74234 95335262 ~ 95347544 (-) True G207869
TU235334 lncRNA upstream 95180 95356208 ~ 95359859 (-) True G207867
XM_036959906.1 mRNA downstream 134591 95097379 ~ 95124547 (-) True LOC110502417
XM_021577703.2 mRNA downstream 238709 95015675 ~ 95020429 (-) True LOC110500368
trnay-gua mRNA downstream 249447 95009602 ~ 95009691 (-) True trnay-gua
XM_036959842.1 mRNA downstream 284225 94959943 ~ 94974913 (-) True LOC110500345
XM_036959851.1 mRNA downstream 290998 94959918 ~ 94968140 (-) False LOC110500345
LOC118944198 mRNA upstream 10065 95271093 ~ 95271272 (-) True LOC118944198
XM_021580524.2 mRNA upstream 367421 95628449 ~ 95631972 (-) False parietopsin
XM_036960040.1 mRNA upstream 374868 95635896 ~ 95664503 (-) True LOC110502485
XM_021577854.2 mRNA upstream 442331 95703359 ~ 95721115 (-) True LOC110500466
XR_002475062.2 mRNA upstream 621103 95882131 ~ 95883679 (-) True LOC110533932
TU234691 other downstream 482782 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 629399 94629437 ~ 94629739 (-) True G207249
TU234576 other downstream 641906 94616915 ~ 94617232 (-) True G207244
TU234014 other downstream 930955 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 945220 94313390 ~ 94313918 (-) True G206744
TU235317 other upstream 116695 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 262940 95523968 ~ 95524227 (-) True G207959
TU235358 other upstream 343200 95604228 ~ 95609786 (-) True G207884
TU235350 other upstream 421009 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 421595 95682623 ~ 95686864 (-) True G207876

Expression Profile