RNA id: TU234982



Basic Information


Item Value
RNA id TU234982
length 343
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G207593
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95268306 ~ 95279187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttttaacaatgtacaaatggtaaaaggacacaagataaaataaataagcataaatatgggttgtatttacaatggtgtgtgttcttcactggttgcccttttcttgtggcaacaggtcacaaatcttgctgctgtgattgcacactgtggaatttcacccagtagatatgggagtttttcaaaattggatttgttttcgaattctttgtggatctgtgtaatctgagggaaatatgtgtctctgatatggtcatacattgggcaggaggttaggaagtgcagctcagtttccacctcattttgtgggcagtgagcacatagcctgtcttctcttgagaacca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU234981 lncRNA downstream 316 95267522 ~ 95267990 (-) True G207592
TU234976 lncRNA downstream 7213 95259138 ~ 95261093 (-) False G207589
TU234977 lncRNA downstream 7278 95259138 ~ 95261028 (-) True G207589
TU234974 lncRNA downstream 7742 95259138 ~ 95260564 (-) False G207589
TU234953 lncRNA downstream 27420 95240523 ~ 95240886 (-) True G207575
TU235289 lncRNA upstream 17387 95296574 ~ 95296959 (-) True G207836
TU235337 lncRNA upstream 56075 95335262 ~ 95347544 (-) True G207869
TU235334 lncRNA upstream 77021 95356208 ~ 95359859 (-) True G207867
TU235343 lncRNA upstream 83073 95362260 ~ 95362626 (-) True G207875
TU235319 lncRNA upstream 93288 95372475 ~ 95382273 (-) True G207859
XM_036959906.1 mRNA downstream 143759 95097379 ~ 95124547 (-) True LOC110502417
XM_021577703.2 mRNA downstream 247877 95015675 ~ 95020429 (-) True LOC110500368
trnay-gua mRNA downstream 258615 95009602 ~ 95009691 (-) True trnay-gua
XM_036959842.1 mRNA downstream 293393 94959943 ~ 94974913 (-) True LOC110500345
XM_036959851.1 mRNA downstream 300166 94959918 ~ 94968140 (-) False LOC110500345
XM_021580524.2 mRNA upstream 349262 95628449 ~ 95631972 (-) False parietopsin
XM_036960040.1 mRNA upstream 356709 95635896 ~ 95664503 (-) True LOC110502485
XM_021577854.2 mRNA upstream 424172 95703359 ~ 95721115 (-) True LOC110500466
XR_002475062.2 mRNA upstream 602944 95882131 ~ 95883679 (-) True LOC110533932
XM_036960073.1 mRNA upstream 772115 96051302 ~ 96092405 (-) True LOC110502500
TU234691 other downstream 491950 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 638567 94629437 ~ 94629739 (-) True G207249
TU234576 other downstream 651074 94616915 ~ 94617232 (-) True G207244
TU234014 other downstream 940123 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 954388 94313390 ~ 94313918 (-) True G206744
TU235317 other upstream 98536 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 244781 95523968 ~ 95524227 (-) True G207959
TU235358 other upstream 325041 95604228 ~ 95609786 (-) True G207884
TU235350 other upstream 402850 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 403436 95682623 ~ 95686864 (-) True G207876

Expression Profile