RNA id: TU235289



Basic Information


Item Value
RNA id TU235289
length 386
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G207836
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95296574 ~ 95296959 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctctctctctctctctctctctgtgtgtctctctctctctgtcactccatcCCTTTTTCTACAACTGACTCTGGACAAGTGCTGTGTGTGACCAAGTTCTCAAAGCTTTTCTGtgctccctcttgctctctcctgcTCAAGCACACACTACCTTACACAGACGTACTCACACACATGTCCCCTCTGCCAAGTATATTTACCTTTAATGAGATCCAGACTGCGTGTGTGTGGCTCTGGAGGCTGGCAGTAACCTCTGTAGATTACTGATCATTTCCCCTTCATTGTTCTTTTCCCCTcccctgggctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU234982 lncRNA downstream 17387 95268306 ~ 95279187 (-) True G207593
TU234981 lncRNA downstream 28584 95267522 ~ 95267990 (-) True G207592
TU234976 lncRNA downstream 35481 95259138 ~ 95261093 (-) False G207589
TU234977 lncRNA downstream 35546 95259138 ~ 95261028 (-) True G207589
TU234974 lncRNA downstream 36010 95259138 ~ 95260564 (-) False G207589
TU235337 lncRNA upstream 38303 95335262 ~ 95347544 (-) True G207869
TU235334 lncRNA upstream 59249 95356208 ~ 95359859 (-) True G207867
TU235343 lncRNA upstream 65301 95362260 ~ 95362626 (-) True G207875
TU235319 lncRNA upstream 75516 95372475 ~ 95382273 (-) True G207859
TU235391 lncRNA upstream 139100 95436059 ~ 95436584 (-) True G207916
LOC118944198 mRNA downstream 25302 95271093 ~ 95271272 (-) True LOC118944198
XM_036959906.1 mRNA downstream 172027 95097379 ~ 95124547 (-) True LOC110502417
XM_021577703.2 mRNA downstream 276145 95015675 ~ 95020429 (-) True LOC110500368
trnay-gua mRNA downstream 286883 95009602 ~ 95009691 (-) True trnay-gua
XM_036959842.1 mRNA downstream 321661 94959943 ~ 94974913 (-) True LOC110500345
XM_021580524.2 mRNA upstream 331490 95628449 ~ 95631972 (-) False parietopsin
XM_036960040.1 mRNA upstream 338937 95635896 ~ 95664503 (-) True LOC110502485
XM_021577854.2 mRNA upstream 406400 95703359 ~ 95721115 (-) True LOC110500466
XR_002475062.2 mRNA upstream 585172 95882131 ~ 95883679 (-) True LOC110533932
XM_036960073.1 mRNA upstream 754343 96051302 ~ 96092405 (-) True LOC110502500
TU234691 other downstream 520218 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 666835 94629437 ~ 94629739 (-) True G207249
TU234576 other downstream 679342 94616915 ~ 94617232 (-) True G207244
TU234014 other downstream 968391 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 982656 94313390 ~ 94313918 (-) True G206744
TU235317 other upstream 80764 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 227009 95523968 ~ 95524227 (-) True G207959
TU235358 other upstream 307269 95604228 ~ 95609786 (-) True G207884
TU235350 other upstream 385078 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 385664 95682623 ~ 95686864 (-) True G207876

Expression Profile