RNA id: TU235334


Basic Information

Item Value
RNA id TU235334
length 3474
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id G207867
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95356208 ~ 95359859 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caggttttaataagCTTAAACAATCATGTTCAGGTTAAAGCAACGTTTATATGAACTAAAGTTCAGGAAGTTTAGCAGCAGAAAGATATTTGGTTAGAGGAGGTGTTACTACTGGGTTTGAGTCCATCCTCGTCTGTGAAGATTTAGGAACTTGAATGAAAACAAACTGTTGTCTATTAGAAGATGTCCCACAACTAAATTCAAGATTAATTTGTGAACAGAGGATCAGTATTGATTTTGGTGGGTTGTTTATTTATTACAATAGCATACTCATGCTGGGTACTAACACCAAAAACAACCTCGACCTGCATGCACTGACTACTCAAATAAACATAGAGGTATTGAAAACAGAGGTAGAAAACACTTACCAACACTTACTTGGTTCTCTTAATAAACTCACCATGAATACACTTTTACATCATTTGGCTATGAAATATACACTGCTCTCTCAAAATAGACTTTCTACAAAGCTATTACAAATGGAGATTTTAGTCATATTTCTCTCCCACGTTAGTCGATACCACTTCTGAACCTATGCTAATCAAACAAATACAAAGTAAAACAAAAACCTCATATTAAACATAAGTTAACTTTTTAACTTTTCTCTTAGACTATATGTAGCATGCCTTATTAACTCTAATGTAGCTAGACTTTGACTGTGTCACAACATTTCACAGTTGTTAACAGATAATTTAAAACGTTTAAAATGCTGCCTCGTTTTTTTTTTGCGACAAATCGAACGGTTCAATCCAGACACATTTAGAATTTGCCCCCGAAAAAAAACGATTGACATAATTTTACATAACAATCCAATTTCAAGAATGCCTTCTGCAATCAAACTTGTTTCGCTGCCTCATGGTCTACCAATCGTCTGTCCCCACACACAGGCATACCATCACGTACGACCAGACACAGCACAAATTAAATATCCTATCTCTGGTATGTTCACAAACGTCATTCAACTATGGAATGCTGACCGTCAACATTGTCTAGCTGTGTACCTGGAattgtttttaaaaataaatttaatGACATTTCAGAACATGTGGAAAGACCAACCCAAGCCAAGAAAATCCATCCCCCTTATAAAAAACACATTCCTTTCTCTCCACATTTAAGAAGGTGTTAGTAGATTAAAAAGTACAGAAACAATTCAGTTATGTATAGTGTGTACATTAGGTATTTTGTGACATTCACAAGCTCAAGGTTAAATATTCGCTGTTCTTTGTCTGTTGTATGAATAGCTGCTACAGTATATTCAAATAGATAGATCACACTATCGAAACATGACACATATACAGTTAATGTGTTACTGTACAAACAAATATCCATAAAGCATCTTGGgttaggagtgctgatctagggtcagtcCTCCCCGACCCCCGGCCACGTCCATGTGATGTTGTTCATTATGATCCCAAAGTTaaaactgatccaagatcagaactcctactgactcttaaaaaagaaaaaaacatgggCCCCAGTCTTCACGGGTGAACTGGTCAAAGGCATATCAGAGACAGTGTGGTTTGGCATGTGAGCTGGGATGTGTAGTCTGGGATGTGTAGTCTGGGATGTGTAGTCTGGGATGTGTAGTCTGGGATGTGAGCTGGGATGTGTAGTCTGGGATGTGTAGTCTGGGATGTGTAGTCTGGGATGTGTACTGGGATGTGTAGTCTGGGATGTGTAGTCTGGGATGTGTAGTCTGGGATGTGTACTGGGATGTGTAGTCTGGGATGTGTAGTCTGGGATGTGTAGTCTGGGATGTGTAGTCTGGGATGTGTAGTCTGGCATGTGAACTGGGATGTGTAGTCTGGGATGTGTAGTCTGGGATGTGTAGTCTGGGATGTGTAATCTGGGATGTGTAGTCTGGGATGTGGAAGAAAAAGAAAATACAGACTGGGCGTGCTAACTTGACATATTTGGGTGGCTAATTATACAGTCACTGCATGACAAAGCAGTCAGAAGCCATGCATACTCTACCGACGGCACACCTGGGATCAAATACCATGTCTAACTCCTTCAAATGCTGTGGGTGTTTTccttagcctgcctggagtgacagatgggtggggtttgccGTTTGGGGACAATTATTTTGGTCCATTAAATCAGGAATCTCAATCAAACACCGATAAGGGTTTTTGAAATGATTTCAGAATAGTATTTCAACCCAAGTCTGTCTGACGGTGCACTAAGTTAAGTTCAGTAAATAAAAGAAGTGACTGTGACTGTGGACAAAAATAGCCAGGACACTGGTATGTGGGTGAGATGGTTGGTTAAACATAGACTTGAAACACCGGGCTAGGACTGACAGGTGCATTAGAACAGCTGCTAGACTAGCACACACATCTCCCATACACTTCCCCCTTTAATGAGGACACCATAACAAATAGGCATTTACACAACTCTGAAAACCCAGATTAAACATCCTCACTAATAACAAATTCACTCTAGGTAGGACATCTGGAATGATCATTGTATTTTTAAAGTGAATGTAAATGAATGAGAAAATATTTTAGAGCGTAATGCTTTATAAATTAACTATTgcctttaaacatttttttttgtagggAAAAGCATCTGTCACTCTGGACTAGAACTCTACACTAGGTCTTCATTATTCATTTAATTCTAATTGAGAAAAATCCCCATGGTTTGAGCTATTCACAAGACACGGGCACAGACATTAAATTATTTCACCTATTCGACATATTCCTTTAAATAATAAATTACACGTGTAGATATAATTATATTTTCAGAAAGATTCTACTAGGACTTATTTACAACATCAtgtggattttatttatttatttaagagTTTTTAATTCAGCAAAATGTGCAAGATGCAGAGGTGGTTCTTGTTAAAAGATGACCAATCAATTAACATATTAATAATTACATTTAGTAAAATACAAGATGAGAGTTGTATAAGAGTAGTATAAGACATTTAAACTCAGGACCAATTGAGTCCCATAGTCAAGAcccgtgagacagacagagagacagagacagaatgagatgTCACAGGGACAGAACCAGCTAGATTTATGCGGGAAAGGTACTATCCAATTAAATGTAAGTATCCACCCTATGTTCTCAGCTTCATGAAGACCTGTGTCCCCCAGAACAGGAGAGAAAAGGAGTCCATCTTTTCCATCAGAACTATGAGCACACAAGTTTTCCATTTTCAACATGCTCCTGTTTTCTGAACAGTTGTCATCTTAATTTCCTCTTCCTAGCGATGAATTAGAGGAATGGCGTGTGATCTGTTGTTCGTCCCAGATCGATGTGATAAGGGGGTGGGGATGGAGGGTAGTTGTCTATAAGCAGACATTACCGTCTTTGTCGGTGTAACTTGTCACTGATCTGACCTGCTCAACATCGGGCCTCTCAACAAGCTAGCCACGAATCAGAAGCACAGCTGTTGCCGCGGTGACAGTCAGAATAGGGTTCCGTTCTATATCACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235337 lncRNA downstream 8664 95335262 ~ 95347544 (-) True G207869
TU235289 lncRNA downstream 59249 95296574 ~ 95296959 (-) True G207836
TU234982 lncRNA downstream 77021 95268306 ~ 95279187 (-) True G207593
TU234981 lncRNA downstream 88218 95267522 ~ 95267990 (-) True G207592
TU234976 lncRNA downstream 95115 95259138 ~ 95261093 (-) False G207589
TU235343 lncRNA upstream 2401 95362260 ~ 95362626 (-) True G207875
TU235319 lncRNA upstream 12616 95372475 ~ 95382273 (-) True G207859
TU235391 lncRNA upstream 76200 95436059 ~ 95436584 (-) True G207916
TU235392 lncRNA upstream 78800 95438659 ~ 95446469 (-) True G207917
TU235412 lncRNA upstream 122623 95482482 ~ 95482771 (-) True G207934
LOC118944198 mRNA downstream 84936 95271093 ~ 95271272 (-) True LOC118944198
XM_036959906.1 mRNA downstream 231661 95097379 ~ 95124547 (-) True LOC110502417
XM_021577703.2 mRNA downstream 335779 95015675 ~ 95020429 (-) True LOC110500368
trnay-gua mRNA downstream 346517 95009602 ~ 95009691 (-) True trnay-gua
XM_036959842.1 mRNA downstream 381295 94959943 ~ 94974913 (-) True LOC110500345
XM_021580524.2 mRNA upstream 268590 95628449 ~ 95631972 (-) False parietopsin
XM_036960040.1 mRNA upstream 276037 95635896 ~ 95664503 (-) True LOC110502485
XM_021577854.2 mRNA upstream 343500 95703359 ~ 95721115 (-) True LOC110500466
XR_002475062.2 mRNA upstream 522272 95882131 ~ 95883679 (-) True LOC110533932
XM_036960073.1 mRNA upstream 691443 96051302 ~ 96092405 (-) True LOC110502500
TU234691 other downstream 579852 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 726469 94629437 ~ 94629739 (-) True G207249
TU234576 other downstream 738976 94616915 ~ 94617232 (-) True G207244
TU234014 other downstream 1028025 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 1042290 94313390 ~ 94313918 (-) True G206744
TU235317 other upstream 17864 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 164109 95523968 ~ 95524227 (-) True G207959
TU235358 other upstream 244369 95604228 ~ 95609786 (-) True G207884
TU235350 other upstream 322178 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 322764 95682623 ~ 95686864 (-) True G207876

Expression Profile