RNA id: TU235447



Basic Information


Item Value
RNA id TU235447
length 260
RNA type TUCP
GC content 0.35
exon number 1
gene id G207959
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95523968 ~ 95524227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgcgtggccatgcacacctccaactcaatcattaagtttgcagacaacacaacagtagtggacttgattaccaacaatgacgagacagcctacaggaaggaggtaaaggcactcggagtgtggtgtcaggaaaacaacctctcactcaacctctcactcaacatcaacaaaacaaaggagatgatcgtggacttcaggaaacagaagagggagcaccctcctatccacatcgaagggacagcagtggagaaggtggaaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU235446 lncRNA downstream 2346 95521414 ~ 95521622 (-) True G207958
TU235439 lncRNA downstream 12913 95508471 ~ 95511055 (-) True G207951
TU235434 lncRNA downstream 35780 95487927 ~ 95488188 (-) True G207946
TU235432 lncRNA downstream 38073 95485547 ~ 95485895 (-) True G207944
TU235429 lncRNA downstream 39529 95483099 ~ 95484439 (-) True G207943
TU235458 lncRNA upstream 19235 95543462 ~ 95543685 (-) True G207970
TU235473 lncRNA upstream 45597 95569824 ~ 95570113 (-) True G207980
TU235478 lncRNA upstream 54198 95578425 ~ 95578833 (-) True G207985
TU235481 lncRNA upstream 59460 95583687 ~ 95583928 (-) True G207988
TU235486 lncRNA upstream 69192 95593419 ~ 95593643 (-) True G207993
LOC118944198 mRNA downstream 252696 95271093 ~ 95271272 (-) True LOC118944198
XM_036959906.1 mRNA downstream 399421 95097379 ~ 95124547 (-) True LOC110502417
XM_021577703.2 mRNA downstream 503539 95015675 ~ 95020429 (-) True LOC110500368
trnay-gua mRNA downstream 514277 95009602 ~ 95009691 (-) True trnay-gua
XM_036959842.1 mRNA downstream 549055 94959943 ~ 94974913 (-) True LOC110500345
XM_021580524.2 mRNA upstream 104222 95628449 ~ 95631972 (-) False parietopsin
XM_036960040.1 mRNA upstream 111669 95635896 ~ 95664503 (-) True LOC110502485
XM_021577854.2 mRNA upstream 179132 95703359 ~ 95721115 (-) True LOC110500466
XR_002475062.2 mRNA upstream 357904 95882131 ~ 95883679 (-) True LOC110533932
XM_036960073.1 mRNA upstream 527075 96051302 ~ 96092405 (-) True LOC110502500
TU235317 other downstream 115254 95377723 ~ 95408714 (-) True G207858
TU234691 other downstream 747612 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 894229 94629437 ~ 94629739 (-) True G207249
TU234576 other downstream 906736 94616915 ~ 94617232 (-) True G207244
TU234014 other downstream 1195785 94327910 ~ 94328183 (-) True G206750
TU235358 other upstream 80001 95604228 ~ 95609786 (-) True G207884
TU235350 other upstream 157810 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 158396 95682623 ~ 95686864 (-) True G207876
TU235579 other upstream 305147 95829374 ~ 95832362 (-) True G208077
TU236021 other upstream 609850 96134077 ~ 96134472 (-) True G208472

Expression Profile