RNA id: TU235228


Basic Information

Item Value
RNA id TU235228
length 631
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G207797
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95699282 ~ 95703736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTGAGACCATGCCCTGTCCTCGGCACTGTGCCAGGGTACACTCTGTAGACCCCTGGCCCATGACGACACACTCTTCAACCACAGGATGGCAAAGAGCACGATCACCACAATGTTCTGCCAGAATGGAAggaaggagacacacacacacacggagaggcTGGGGGACGACAACATGTAAGAGTCAGGGTCCCTCTAGTGGCCTGAAGCCAGCCCTGGCCTGCTGTTTATGTGTCTTAAATATAAATACTCAGAAAGCTTAACCATCAGCTGACCATGCAGTAGCCTGATTCCAATATGTATTACCAGTGTGACAACGATATGCACACAATGACTAGTACTATCTAGTGTGGTTGACTCACCTACCTTAGTAAAATGCACTGACTATAAgtctctctctctctctctctctctctcaggacaaTGTTGAGTGTTGTTTATTATCATCCTTGGTGGTCAGTGCTGTACAGGGAGGTAGAAGGGATCCAGTCCTTTCTGCGTAGTGTGTTGGAGCATGTACAGGCCTCAGTCTACAGACTCTTCCAGATCACAGTCCCTGATCTTAGCGTTGTCTCTGACCTCATCAAATGTATACGTCTTCAGTATCACTCCGTTTCTGAAAACGGTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235161 lncRNA upstream 35411 95662647 ~ 95663871 (+) True G207749
TU235206 lncRNA upstream 36979 95661016 ~ 95662303 (+) True G207786
TU235104 lncRNA upstream 65883 95632209 ~ 95633399 (+) True G207696
TU235183 lncRNA upstream 74276 95624201 ~ 95625006 (+) True G207770
TU235178 lncRNA upstream 82158 95616882 ~ 95617124 (+) True G207766
TU235230 lncRNA downstream 2718 95706454 ~ 95720856 (+) True G207798
TU235238 lncRNA downstream 19889 95723625 ~ 95723889 (+) True G207806
TU235251 lncRNA downstream 60556 95764292 ~ 95764518 (+) True G207818
TU235254 lncRNA downstream 65563 95769299 ~ 95769552 (+) True G207821
TU235257 lncRNA downstream 73446 95777182 ~ 95807479 (+) False G207822
XM_036934462.1 mRNA upstream 542 95688561 ~ 95698740 (+) True LOC110502494
NM_001195009.2 mRNA upstream 12427 95678926 ~ 95686855 (+) True grp94
XM_036960035.1 mRNA upstream 93457 95482323 ~ 95605825 (+) True LOC110502472
XM_036960028.1 mRNA upstream 282418 95372098 ~ 95416864 (+) False LOC110502465
XM_036960029.1 mRNA upstream 282418 95372098 ~ 95416864 (+) True LOC110502465
XM_036960052.1 mRNA downstream 28121 95731857 ~ 95747216 (+) True LOC110500475
XM_036960053.1 mRNA downstream 47143 95750879 ~ 95763143 (+) False LOC110500485
XM_036960057.1 mRNA downstream 47253 95750989 ~ 95763143 (+) True LOC110500485
XM_036934469.1 mRNA downstream 181851 95885587 ~ 95888114 (+) True LOC118936882
XM_036960062.1 mRNA downstream 289470 95993206 ~ 96011204 (+) False LOC110500522
TU234200 other upstream 993034 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 1067015 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 1137058 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 1261600 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 1597410 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 524057 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 908693 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 1782740 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 1914881 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 1994375 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile