RNA id: TU235251


Basic Information

Item Value
RNA id TU235251
length 227
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G207818
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95764292 ~ 95764518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTAGAGTTTAGGAGGTAGGCTTTAGGAGATATCGTAGGATGTAGAGTTTAGGAGGTAGGCTTTAGGAGATACAAGGAGAAAGTAGTGAAAGAACAGGACAGAGACATGATCAACAATAGACAGATATGTGTAGCGCCTTCTTAACTGAAACAGCTCCACACAGAAGAACTACAGAGGAGAAACTAAGCTAACcccaattgaattgaattgaattgaattgaattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235238 lncRNA upstream 40403 95723625 ~ 95723889 (+) True G207806
TU235230 lncRNA upstream 43436 95706454 ~ 95720856 (+) True G207798
TU235228 lncRNA upstream 60556 95699282 ~ 95703736 (+) True G207797
TU235161 lncRNA upstream 100421 95662647 ~ 95663871 (+) True G207749
TU235206 lncRNA upstream 101989 95661016 ~ 95662303 (+) True G207786
TU235254 lncRNA downstream 4781 95769299 ~ 95769552 (+) True G207821
TU235257 lncRNA downstream 12664 95777182 ~ 95807479 (+) False G207822
TU235256 lncRNA downstream 13269 95777787 ~ 95810614 (+) False G207822
TU235263 lncRNA downstream 13269 95777787 ~ 95800589 (+) False G207822
TU235264 lncRNA downstream 13269 95777787 ~ 95802575 (+) False G207822
XM_036960053.1 mRNA upstream 1149 95750879 ~ 95763143 (+) False LOC110500485
XM_036960057.1 mRNA upstream 1149 95750989 ~ 95763143 (+) True LOC110500485
XM_036960052.1 mRNA upstream 17076 95731857 ~ 95747216 (+) True LOC110500475
XM_036934462.1 mRNA upstream 65552 95688561 ~ 95698740 (+) True LOC110502494
NM_001195009.2 mRNA upstream 77437 95678926 ~ 95686855 (+) True grp94
XM_036934469.1 mRNA downstream 121069 95885587 ~ 95888114 (+) True LOC118936882
XM_036960062.1 mRNA downstream 228688 95993206 ~ 96011204 (+) False LOC110500522
XM_021577932.2 mRNA downstream 236812 96001330 ~ 96011204 (+) False LOC110500522
XM_021577940.2 mRNA downstream 269702 96034220 ~ 96043570 (+) True LOC110500533
XM_036960132.1 mRNA downstream 1206873 96971391 ~ 97028188 (+) True LOC110500557
TU234200 other upstream 1058044 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 1132025 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 1202068 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 1326610 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 1662420 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 463275 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 847911 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 1721958 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 1854099 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 1933593 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile