RNA id: TU235263


Basic Information

Item Value
RNA id TU235263
length 2235
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G207822
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95777182 ~ 95810614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacaattaaagagatagtgaaagagactattaaagagacaattaaagagacagagaaagagacaattaaagagacagtgaaagagaaagaaacagttaaagagacagttaaagagacagggaaagagacagttaaagagacaattaaggagacagtgaaagagacagggaaagagacagtgaaagagacattgaaagagacagttaaagagacagtgaaagagacagtgaaaaagacaattaaagagacaattaaagagacagtgaaagagacaattaaagagacagtgaaagagacaattaaagagatagtgaaagagactattaaagagacaattaaaaagacagagaaagagacagggaaagagacagtgaaagagaaagagacagtgaaagaaacagtgaaagagacaattaaagagacaattaaagagacagtgaaagagacagtgaaagagaaagaaacagttaaagagacagttaaagagacagggaaagagacagtcaaagagacaattaaggagacagtgaaagagacagggaaagagacagtaaaagagacagtgaaagagaaagagacagtgaaagagacagtgaaagaaacagtgaaagagacaattaaagagacagtgaaagagacagtgaaagagaaagagacagttaaagagacagtgaaagaaaaagagacagtgaaagagaaagagacggtgaaagagacagtgaaagagacagtgaaagagacaattaaagagacagttaaagagacagtgaaagagacagtgaaagagaaagaaacagttaaagagacagttaaagagacagggaaagagacagttaaagagacagtgaaagagacagtgaaagagacaattaaagagacagtgaaagagacagggaaagagacagtgaaagagacagtgaaagagacagtgaaaaagacaattaaagagacaattaaagagacagtgaaagagacaattaaagagacagtgaaagagacaattaaagagatagtgaaagagactattaaagagacaattaaaaagacagagaaagagacagggaaagagacagtgaaagagacagtgaaagagacagttaaagagacagggaaagagacagtgaaagagacagttaaagagaaagagacagtgaaagagacagtgaaagagacagttaaagagacagtgaaagagacagagacagttaaagagaaagagacaattaaagagacagttaaagagaaagagacagagaaagagacagtgaaggagacagtgaaagagacagttaaagagacagtgaaagagaaagagacagttaaagagaaagagacaattaaagagacagttaaagagacagtgaaagagaaagagacagtgagagacagttaaagagagtgaaagagaaagagacagttagagacagtgaaagagacagtgaaagagaatgagacagttaaagagacagttaaagagacagtgaaagagacagttaaagagacagtgaaagagaaagagacagtgaaagagacagtgaaagagaaagagacagtgaaagagacagttaaagagacagtgaaagagacagtgaaagagacagtgaaagagaaagagacagtgaaagagacagttaaagagaaagagacagttaaagagacagtgaaagagacagttaaagagaaagagacagtgaaagagacagttaaagagaaagagacagttaaagagacagtgaaagagacagtgaaagagacagtgaaagagacagttaaagagacagtgaaagagacagtgaaagagaaagagacagtgaaagagaaagagacagagacagtgaaagagacagtgaaagagaaagagacagtgaaagagacagttaaagagacagtgaaagagacagtgaaagagacagtgaaagagaaagagacagtgaaagagacagttaaagagaaagagacagttaaagagacagtgaaagagacagttaaagagaaagagacagtgaaagagacagttaaagagaaagagacagttaaagagacagtgaaagagacagttaaagagacagtgaaagagaaagagacagttaaagagaaagagacaattaaagagacagttaaagagacagtgaaagagaaagagacagtgagagacagttaaagagagtgaaagagaaagagacagtgaaagagacagtgaaagagaatgagacagttaaagagacagttaaagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235254 lncRNA upstream 8235 95769299 ~ 95769552 (+) True G207821
TU235251 lncRNA upstream 13269 95764292 ~ 95764518 (+) True G207818
TU235238 lncRNA upstream 53898 95723625 ~ 95723889 (+) True G207806
TU235230 lncRNA upstream 56931 95706454 ~ 95720856 (+) True G207798
TU235228 lncRNA upstream 74051 95699282 ~ 95703736 (+) True G207797
TU235278 lncRNA downstream 119 95800708 ~ 95809969 (+) True G207825
TU235279 lncRNA downstream 2573 95803162 ~ 95807668 (+) True G207826
TU235276 lncRNA downstream 3466 95804055 ~ 95825942 (+) False G207823
TU235271 lncRNA downstream 7505 95808094 ~ 95810614 (+) True G207822
TU235272 lncRNA downstream 10712 95811301 ~ 95825942 (+) False G207823
XM_036960053.1 mRNA upstream 14644 95750879 ~ 95763143 (+) False LOC110500485
XM_036960057.1 mRNA upstream 14644 95750989 ~ 95763143 (+) True LOC110500485
XM_036960052.1 mRNA upstream 30571 95731857 ~ 95747216 (+) True LOC110500475
XM_036934462.1 mRNA upstream 79047 95688561 ~ 95698740 (+) True LOC110502494
NM_001195009.2 mRNA upstream 90932 95678926 ~ 95686855 (+) True grp94
XM_036934469.1 mRNA downstream 84998 95885587 ~ 95888114 (+) True LOC118936882
XM_036960062.1 mRNA downstream 192617 95993206 ~ 96011204 (+) False LOC110500522
XM_021577932.2 mRNA downstream 200741 96001330 ~ 96011204 (+) False LOC110500522
XM_021577940.2 mRNA downstream 233631 96034220 ~ 96043570 (+) True LOC110500533
XM_036960132.1 mRNA downstream 1170802 96971391 ~ 97028188 (+) True LOC110500557
TU234200 other upstream 1071539 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 1145520 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 1215563 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 1340105 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 1675915 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 427204 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 811840 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 1685887 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 1818028 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 1897522 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile